Variant report

Variant	rs6538023
Chromosome Location	chr12:86585133-86585134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10776953	0.81[CEU][hapmap]
rs10776954	0.82[CEU][hapmap]
rs10776958	0.83[EUR][1000 genomes]
rs10776967	0.82[EUR][1000 genomes]
rs10858411	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs10858412	0.81[CEU][hapmap]
rs10858415	0.85[JPT][hapmap]
rs10858417	0.81[EUR][1000 genomes]
rs10858420	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs1097997	0.88[CEU][hapmap]
rs11103930	0.85[JPT][hapmap]
rs11830208	0.85[JPT][hapmap]
rs11830448	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12303046	0.85[JPT][hapmap]
rs12319410	1.00[JPT][hapmap]
rs12319593	1.00[JPT][hapmap]
rs12581912	0.92[JPT][hapmap]
rs1389292	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1389294	0.80[CEU][hapmap]
rs1463750	1.00[CEU][hapmap]
rs1493408	0.81[CEU][hapmap]
rs1493414	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs1493417	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs1493418	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs1493419	0.88[CEU][hapmap]
rs1493420	0.82[CEU][hapmap]
rs1532263	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1628799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1689357	0.80[ASN][1000 genomes]
rs1689364	1.00[CEU][hapmap]
rs1698787	0.80[ASN][1000 genomes]
rs17013858	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17013981	1.00[JPT][hapmap]
rs1986602	1.00[JPT][hapmap]
rs1986603	1.00[JPT][hapmap]
rs1994863	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2141927	0.92[JPT][hapmap]
rs2405929	1.00[JPT][hapmap]
rs2405931	0.85[JPT][hapmap]
rs2405932	0.87[CEU][hapmap]
rs2405934	0.81[CEU][hapmap]
rs2406120	0.83[EUR][1000 genomes]
rs2406128	0.82[CEU][hapmap]
rs2452803	0.81[CEU][hapmap]
rs2452805	0.80[CEU][hapmap]
rs2452808	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs2471560	0.84[CHB][hapmap]
rs2471562	0.83[CEU][hapmap]
rs2471565	1.00[CEU][hapmap]
rs2897274	1.00[JPT][hapmap]
rs2897275	0.85[JPT][hapmap]
rs2897277	0.85[JPT][hapmap]
rs2897278	0.85[JPT][hapmap]
rs4526834	0.85[JPT][hapmap]
rs57977247	0.81[ASN][1000 genomes]
rs6538021	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs6538024	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6538025	0.84[CHB][hapmap]
rs6538027	0.94[CEU][hapmap]
rs7134944	0.87[CEU][hapmap]
rs7312245	0.94[CEU][hapmap]
rs7954833	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs7966656	0.83[EUR][1000 genomes]
rs7972185	0.87[CEU][hapmap]
rs7980126	0.85[JPT][hapmap]
rs839099	0.88[CEU][hapmap]
rs839100	1.00[CEU][hapmap]
rs839101	0.80[ASN][1000 genomes]
rs839104	0.84[CHB][hapmap]
rs839105	0.84[CHB][hapmap]
rs839106	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs839107	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs839109	0.88[CEU][hapmap]
rs839112	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs839114	0.88[CEU][hapmap]
rs839116	0.88[CEU][hapmap]
rs839117	0.88[CEU][hapmap]
rs839134	0.88[CEU][hapmap]
rs839138	0.88[CEU][hapmap]
rs839139	0.88[CEU][hapmap]
rs839147	0.88[CEU][hapmap]
rs839148	0.84[CHB][hapmap]
rs839149	0.84[CHB][hapmap]
rs839151	0.84[CHB][hapmap]
rs839152	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs839153	0.84[CHB][hapmap]
rs839154	0.83[CHB][hapmap]
rs839156	0.84[CHB][hapmap]
rs839157	0.84[CHB][hapmap]
rs839158	0.84[CHB][hapmap]
rs839159	0.84[CHB][hapmap]
rs839162	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs839163	0.82[ASN][1000 genomes]
rs839164	0.82[ASN][1000 genomes]
rs839165	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs839166	0.83[CEU][hapmap];0.84[CHB][hapmap]
rs839168	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs839170	0.83[CHB][hapmap]
rs839171	0.84[CHB][hapmap]
rs839183	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs839186	0.82[EUR][1000 genomes]
rs839187	0.82[EUR][1000 genomes]
rs844433	1.00[CEU][hapmap]
rs844434	0.83[CEU][hapmap];0.84[CHB][hapmap]
rs844435	0.84[CHB][hapmap]
rs844437	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs858213	1.00[CEU][hapmap]
rs863392	0.84[CHB][hapmap]
rs863394	0.89[CHB][hapmap];0.80[ASN][1000 genomes]
rs863395	0.84[CHB][hapmap]
rs865138	0.84[CHB][hapmap]
rs865721	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041397	chr12:86438607-86737558	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3442004	chr12:86514695-86599965	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1053087	chr12:86569126-86733418	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv541564	chr12:86569126-86733418	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv800	chr12:86572379-86617887	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86584600-86585600	Enhancers	Fetal Brain Male	brain

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