Variant report

Variant	rs6538024
Chromosome Location	chr12:86585136-86585137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10745407	0.86[JPT][hapmap]
rs10745408	0.86[JPT][hapmap]
rs10776953	0.86[EUR][1000 genomes]
rs10776955	0.86[JPT][hapmap]
rs10776961	0.80[JPT][hapmap]
rs10858408	0.86[JPT][hapmap]
rs10858412	0.80[JPT][hapmap]
rs10858415	0.93[JPT][hapmap]
rs11103930	0.93[JPT][hapmap]
rs11830208	0.93[JPT][hapmap]
rs11830448	1.00[JPT][hapmap]
rs12303046	0.93[JPT][hapmap]
rs12319410	1.00[JPT][hapmap]
rs12319593	1.00[JPT][hapmap]
rs12581912	0.92[JPT][hapmap]
rs12582690	0.81[JPT][hapmap]
rs1493408	0.85[EUR][1000 genomes]
rs1493415	0.84[JPT][hapmap]
rs1493420	0.85[EUR][1000 genomes]
rs1493421	0.91[EUR][1000 genomes]
rs1602848	0.86[ASN][1000 genomes]
rs1628799	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1689357	0.88[ASN][1000 genomes]
rs1698787	0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs17013858	1.00[JPT][hapmap]
rs17013981	1.00[JPT][hapmap]
rs1986602	1.00[JPT][hapmap]
rs1986603	1.00[JPT][hapmap]
rs1994863	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2141927	0.92[JPT][hapmap]
rs2220782	0.86[JPT][hapmap]
rs2250915	0.85[EUR][1000 genomes]
rs2405925	0.81[JPT][hapmap]
rs2405928	0.81[JPT][hapmap]
rs2405929	1.00[JPT][hapmap]
rs2405930	0.86[JPT][hapmap]
rs2405931	0.93[JPT][hapmap]
rs2406115	0.80[JPT][hapmap]
rs2406116	0.86[JPT][hapmap]
rs2406118	0.86[JPT][hapmap]
rs2406122	0.86[JPT][hapmap]
rs2406123	0.86[JPT][hapmap]
rs2406127	0.86[JPT][hapmap]
rs2406128	0.86[JPT][hapmap]
rs2452807	0.86[JPT][hapmap]
rs2465143	0.80[JPT][hapmap]
rs2465144	0.86[JPT][hapmap]
rs2471560	0.82[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs2471561	0.92[EUR][1000 genomes]
rs2471562	0.86[EUR][1000 genomes]
rs2471563	0.92[EUR][1000 genomes]
rs2471568	0.86[JPT][hapmap]
rs2471569	0.86[JPT][hapmap]
rs2897274	1.00[JPT][hapmap]
rs2897275	0.93[JPT][hapmap]
rs2897277	0.93[JPT][hapmap]
rs2897278	0.93[JPT][hapmap]
rs2897280	0.81[JPT][hapmap]
rs4265650	0.86[JPT][hapmap]
rs4526834	0.93[JPT][hapmap]
rs4628748	0.80[JPT][hapmap]
rs6538023	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6538025	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs6538029	0.86[JPT][hapmap]
rs6538033	0.81[JPT][hapmap]
rs7135177	0.85[JPT][hapmap]
rs7299319	0.80[JPT][hapmap]
rs7953196	0.86[JPT][hapmap]
rs7957560	0.86[JPT][hapmap]
rs7964553	0.86[JPT][hapmap]
rs7972484	0.86[JPT][hapmap]
rs7973773	0.86[JPT][hapmap]
rs7980126	0.93[JPT][hapmap]
rs839101	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs839104	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs839105	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs839148	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs839149	0.86[JPT][hapmap]
rs839150	0.84[JPT][hapmap]
rs839151	0.86[JPT][hapmap]
rs839152	0.91[JPT][hapmap]
rs839153	0.86[JPT][hapmap]
rs839154	0.81[JPT][hapmap]
rs839156	0.86[JPT][hapmap]
rs839157	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs839158	0.86[JPT][hapmap]
rs839159	0.86[JPT][hapmap]
rs839162	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs839163	0.90[ASN][1000 genomes]
rs839164	0.90[ASN][1000 genomes]
rs839165	0.82[CHB][hapmap];0.86[JPT][hapmap];0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs839166	0.86[JPT][hapmap]
rs839168	0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs839170	0.86[JPT][hapmap]
rs839171	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs844434	0.86[JPT][hapmap]
rs844435	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs863392	0.86[JPT][hapmap]
rs863394	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs863395	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs865138	0.86[JPT][hapmap]
rs865721	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041397	chr12:86438607-86737558	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3442004	chr12:86514695-86599965	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1053087	chr12:86569126-86733418	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv541564	chr12:86569126-86733418	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv800	chr12:86572379-86617887	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86584600-86585600	Enhancers	Fetal Brain Male	brain

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