Variant report

Variant	rs653803
Chromosome Location	chr6:150730270-150730271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150727670..150730575-chr6:150733392..150736317,2	K562	blood:
2	chr6:150723506..150725309-chr6:150728737..150730322,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs4870512	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs587968	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs589890	0.97[ASN][1000 genomes]
rs603815	0.92[EUR][1000 genomes]
rs616195	0.84[ASN][1000 genomes]
rs646636	0.92[EUR][1000 genomes]
rs648460	0.92[EUR][1000 genomes]
rs649677	0.92[EUR][1000 genomes]
rs649744	0.92[EUR][1000 genomes]
rs651465	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs660484	0.82[EUR][1000 genomes]
rs665670	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs681442	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs682518	0.92[EUR][1000 genomes]
rs683826	0.92[EUR][1000 genomes]
rs725904	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9371441	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022455	chr6:150727247-150755933	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150724800-150731000	Weak transcription	Lung	lung
2	chr6:150725400-150730400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:150725400-150731000	Weak transcription	Right Ventricle	heart
4	chr6:150725400-150733000	Weak transcription	Stomach Mucosa	stomach
5	chr6:150725600-150730400	Weak transcription	Hela-S3	cervix
6	chr6:150725600-150730600	Weak transcription	NH-A	brain
7	chr6:150725600-150731200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:150727600-150734000	Enhancers	Osteobl	bone
9	chr6:150728400-150730400	Weak transcription	Spleen	Spleen
10	chr6:150728400-150732400	Enhancers	Fetal Lung	lung
11	chr6:150728600-150730400	Weak transcription	Adipose Nuclei	Adipose
12	chr6:150728800-150732000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:150729600-150731200	Enhancers	Esophagus	oesophagus
14	chr6:150729800-150731000	Enhancers	NHEK	skin
15	chr6:150729800-150732200	Enhancers	Liver	Liver
16	chr6:150730000-150730600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
17	chr6:150730000-150730800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:150730000-150731200	Enhancers	Gastric	stomach
19	chr6:150730000-150731400	Enhancers	Duodenum Mucosa	Duodenum
20	chr6:150730000-150731400	Enhancers	Left Ventricle	heart
21	chr6:150730000-150731400	Enhancers	Pancreas	Pancrea
22	chr6:150730000-150731400	Enhancers	HMEC	breast
23	chr6:150730000-150732200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:150730200-150731400	Enhancers	Fetal Muscle Trunk	muscle
25	chr6:150730200-150731400	Enhancers	Fetal Muscle Leg	muscle
26	chr6:150730200-150731800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr6:150730200-150732800	Enhancers	Fetal Heart	heart
28	chr6:150730200-150732800	Enhancers	Fetal Kidney	kidney

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