Variant report
| Variant | rs6540609 |
|---|---|
| Chromosome Location | chr1:210778585-210778586 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10779539 | 1.00[AMR][1000 genomes] |
| rs10863846 | 1.00[AMR][1000 genomes] |
| rs11119545 | 1.00[AMR][1000 genomes] |
| rs11119548 | 0.90[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12145420 | 1.00[AMR][1000 genomes] |
| rs4240838 | 0.89[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs4326622 | 1.00[AMR][1000 genomes] |
| rs4357526 | 0.90[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs4369231 | 0.88[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs4402133 | 1.00[AMR][1000 genomes] |
| rs4405138 | 1.00[AMR][1000 genomes] |
| rs4528195 | 1.00[AMR][1000 genomes] |
| rs4565714 | 1.00[AMR][1000 genomes] |
| rs4845056 | 1.00[AMR][1000 genomes] |
| rs4845057 | 1.00[AMR][1000 genomes] |
| rs4845058 | 1.00[AMR][1000 genomes] |
| rs4845059 | 1.00[AMR][1000 genomes] |
| rs4845060 | 1.00[AMR][1000 genomes] |
| rs4845061 | 1.00[AMR][1000 genomes] |
| rs4845062 | 1.00[AMR][1000 genomes] |
| rs4845063 | 1.00[AMR][1000 genomes] |
| rs4845064 | 1.00[AMR][1000 genomes] |
| rs6540608 | 0.88[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs6682840 | 1.00[AMR][1000 genomes] |
| rs6693375 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv873148 | chr1:210665583-210994339 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv873149 | chr1:210749312-210793972 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:210774000-210782000 | Weak transcription | A549 | lung |
| 2 | chr1:210778200-210779200 | Genic enhancers | HSMMtube | muscle |
