Variant report

Variant	rs6540635
Chromosome Location	chr1:211090361-211090362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12121565	0.87[AFR][1000 genomes]
rs2134108	0.87[AFR][1000 genomes]
rs34773128	0.87[AFR][1000 genomes]
rs4951487	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs905115	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211082800-211091000	Weak transcription	Brain Anterior Caudate	brain
2	chr1:211083000-211091000	Weak transcription	Brain Angular Gyrus	brain
3	chr1:211083000-211091000	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:211083000-211091200	Weak transcription	Brain Substantia Nigra	brain
5	chr1:211085800-211091000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:211087600-211091400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:211088400-211091000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:211089200-211098800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:211089600-211091200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:211089600-211091600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:211089800-211091000	Weak transcription	HSMMtube	muscle
12	chr1:211090000-211091200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr1:211090000-211093000	Weak transcription	Pancreas	Pancrea
14	chr1:211090000-211094000	Weak transcription	Liver	Liver
15	chr1:211090200-211091400	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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