Variant report

Variant	rs6540636
Chromosome Location	chr1:211120598-211120599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11119654	0.95[CHB][hapmap];0.98[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs11806852	0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12021704	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs12022715	0.91[ASN][1000 genomes]
rs12022739	0.91[ASN][1000 genomes]
rs12025525	0.85[ASN][1000 genomes]
rs12026311	0.85[ASN][1000 genomes]
rs12026374	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs12027535	0.84[ASN][1000 genomes]
rs12028941	0.91[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.89[ASN][1000 genomes]
rs12030715	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs12030905	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12036999	0.91[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12039302	0.96[ASN][1000 genomes]
rs12042686	1.00[YRI][hapmap]
rs12043937	0.91[ASN][1000 genomes]
rs12043952	0.89[ASN][1000 genomes]
rs12046391	0.93[ASN][1000 genomes]
rs12070402	0.91[ASN][1000 genomes]
rs12406562	0.93[ASN][1000 genomes]
rs12407609	0.82[ASN][1000 genomes]
rs1501544	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1501545	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1501548	0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1501549	0.95[CHB][hapmap];0.98[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1501550	0.95[CHB][hapmap];0.98[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1501555	0.84[CHD][hapmap];0.82[JPT][hapmap]
rs1532682	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2047708	0.83[YRI][hapmap]
rs2358210	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4570464	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4575146	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[ASN][1000 genomes]
rs56999636	0.95[ASN][1000 genomes]
rs57179129	0.85[ASN][1000 genomes]
rs57655345	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61848562	0.85[ASN][1000 genomes]
rs61848568	0.80[ASN][1000 genomes]
rs61848992	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61849000	1.00[ASN][1000 genomes]
rs61849015	0.96[ASN][1000 genomes]
rs61849024	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61850228	0.84[ASN][1000 genomes]
rs6540638	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6540648	0.91[CHB][hapmap];0.98[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs6659020	0.81[ASN][1000 genomes]
rs6659135	0.93[ASN][1000 genomes]
rs6663672	0.81[ASN][1000 genomes]
rs6666287	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6666342	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6675213	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6678568	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6680997	0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6689715	0.91[ASN][1000 genomes]
rs7514606	0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.89[YRI][hapmap];0.85[ASN][1000 genomes]
rs7515316	0.86[ASN][1000 genomes]
rs7518841	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7522894	0.82[ASN][1000 genomes]
rs7523929	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7526579	0.81[LWK][hapmap];0.89[MKK][hapmap];0.83[YRI][hapmap]
rs7537597	0.82[ASN][1000 genomes]
rs7551412	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7553997	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7554723	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6540636	PIGR	cis	parietal	SCAN
rs6540636	FAM71A	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211112200-211124000	Weak transcription	HSMMtube	muscle
2	chr1:211112800-211124800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:211120400-211122400	Weak transcription	HSMM	muscle

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