Variant report

Variant	rs6540653
Chromosome Location	chr1:211237047-211237048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10779549	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1113260	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12122909	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12124026	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12142472	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1846945	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4131710	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4265492	0.88[ASN][1000 genomes]
rs4494205	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4511184	0.82[ASN][1000 genomes]
rs4592307	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4951493	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4951495	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4951499	0.82[AFR][1000 genomes]
rs4951716	0.80[AMR][1000 genomes]
rs6702607	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211224600-211242200	Weak transcription	A549	lung
2	chr1:211227400-211239000	Weak transcription	Fetal Brain Male	brain
3	chr1:211228400-211248200	Weak transcription	Brain Anterior Caudate	brain
4	chr1:211229800-211248400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:211234600-211248400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:211235800-211237200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:211236000-211248600	Strong transcription	HSMM	muscle
8	chr1:211236800-211237400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:211236800-211248000	Weak transcription	Brain Hippocampus Middle	brain
10	chr1:211237000-211240000	Weak transcription	HSMMtube	muscle
11	chr1:211237000-211241000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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