The 2.0 version of rSNPBase

Variant report

Variant rs6540678
Chromosome Location chr1:211479826-211479827
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:211434400-211487000 Weak transcription Gastric stomach
2 chr1:211440800-211481800 Strong transcription Monocytes-CD14+_RO01746 blood
3 chr1:211440800-211483600 Strong transcription Primary monocytes fromperipheralblood blood
4 chr1:211443000-211480000 Strong transcription Dnd41 blood
5 chr1:211443000-211480400 Strong transcription Placenta Placenta
6 chr1:211443200-211484000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr1:211444800-211491200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
8 chr1:211445800-211486800 Weak transcription Esophagus oesophagus
9 chr1:211447800-211486200 Weak transcription Stomach Mucosa stomach
10 chr1:211449400-211482000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
11 chr1:211450400-211480200 Strong transcription Duodenum Mucosa Duodenum
12 chr1:211455000-211486800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr1:211456600-211486000 Weak transcription Small Intestine intestine
14 chr1:211461200-211499600 Weak transcription Psoas Muscle Psoas
15 chr1:211461400-211499600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
16 chr1:211461600-211499600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr1:211462000-211480200 Strong transcription HSMM muscle
18 chr1:211462200-211480200 Strong transcription Primary B cells from cord blood blood
19 chr1:211465200-211483200 Weak transcription Right Ventricle heart
20 chr1:211465600-211486800 Weak transcription Pancreas Pancrea
21 chr1:211465800-211486800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr1:211466200-211485800 Weak transcription H9 Cell Line embryonic stem cell
23 chr1:211466800-211483000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr1:211466800-211486000 Weak transcription Aorta Aorta
25 chr1:211467000-211483800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
26 chr1:211467000-211486800 Weak transcription Spleen Spleen
27 chr1:211467200-211486600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
28 chr1:211467200-211493800 Weak transcription Fetal Brain Male brain
29 chr1:211467400-211485600 Weak transcription Brain Angular Gyrus brain
30 chr1:211467600-211486000 Weak transcription Placenta Amnion Placenta Amnion
31 chr1:211467800-211486200 Weak transcription Brain Substantia Nigra brain
32 chr1:211467800-211494200 Weak transcription Primary T killer memory cells from peripheral blood blood
33 chr1:211468000-211485800 Weak transcription Colon Smooth Muscle Colon
34 chr1:211469400-211485600 Weak transcription H1 Cell Line embryonic stem cell
35 chr1:211470000-211486000 Weak transcription Primary T killer naive cells fromperipheralblood blood
36 chr1:211471800-211482600 Weak transcription Hela-S3 cervix
37 chr1:211471800-211483000 Weak transcription Skeletal Muscle Male skeletal muscle
38 chr1:211472000-211480400 Strong transcription HUES64 Cell Line embryonic stem cell
39 chr1:211472000-211485600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
40 chr1:211472000-211486600 Weak transcription iPS-15b Cell Line embryonic stem cell
41 chr1:211472000-211487000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
42 chr1:211473800-211486000 Weak transcription Lung lung
43 chr1:211473800-211486600 Weak transcription Fetal Intestine Small intestine
44 chr1:211473800-211486600 Weak transcription Fetal Stomach stomach
45 chr1:211474200-211486200 Weak transcription Colonic Mucosa Colon
46 chr1:211474400-211485600 Weak transcription Ovary ovary
47 chr1:211474400-211486000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
48 chr1:211474400-211486200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
49 chr1:211474800-211486200 Weak transcription Primary T helper naive cells from peripheral blood blood
50 chr1:211474800-211497000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015