Variant report

Variant	rs6540681
Chromosome Location	chr1:211493573-211493574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211482646..211486913-chr1:211491514..211494824,4	K562	blood:
2	chr1:211493080..211496761-chr1:211497511..211501658,5	K562	blood:
3	chr1:211483725..211485825-chr1:211493272..211494824,2	K562	blood:

Variant related genes	Relation type
ENSG00000082512	Chromatin interaction
ENSG00000117625	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10732682	0.85[YRI][hapmap]
rs10863886	0.86[YRI][hapmap]
rs10863887	0.86[YRI][hapmap]
rs11119713	0.90[ASN][1000 genomes]
rs11803005	0.90[ASN][1000 genomes]
rs12723208	1.00[CEU][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap]
rs12729996	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12731366	0.89[CEU][hapmap]
rs12743163	0.88[CEU][hapmap]
rs12743458	0.95[ASN][1000 genomes]
rs12752670	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap]
rs12754607	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12754747	0.90[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17188916	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.95[ASN][1000 genomes]
rs17188937	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17267484	0.89[CEU][hapmap];0.88[CHB][hapmap]
rs17267491	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17267554	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[GIH][hapmap];0.83[TSI][hapmap]
rs17267561	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs1983259	0.86[YRI][hapmap]
rs2280079	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.81[ASN][1000 genomes]
rs34140425	0.85[ASN][1000 genomes]
rs34256746	0.95[ASN][1000 genomes]
rs34813082	0.90[ASN][1000 genomes]
rs35228985	0.90[ASN][1000 genomes]
rs35791308	0.81[ASN][1000 genomes]
rs3738200	0.88[CHB][hapmap]
rs3855878	0.86[YRI][hapmap]
rs41275358	0.95[ASN][1000 genomes]
rs4347268	0.86[YRI][hapmap]
rs4951517	0.86[YRI][hapmap]
rs4951735	0.86[YRI][hapmap]
rs4951737	0.86[YRI][hapmap]
rs4951739	0.86[YRI][hapmap]
rs6540676	0.86[YRI][hapmap]
rs6540678	0.86[YRI][hapmap]
rs6661043	0.86[YRI][hapmap]
rs6663627	0.86[YRI][hapmap]
rs6679980	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.95[ASN][1000 genomes]
rs6692815	0.86[YRI][hapmap]
rs67764962	0.95[ASN][1000 genomes]
rs71640006	0.85[ASN][1000 genomes]
rs7517135	0.86[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6540681	AVPR1B	cis	parietal	SCAN

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211461200-211499600	Weak transcription	Psoas Muscle	Psoas
2	chr1:211461400-211499600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:211461600-211499600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:211467200-211493800	Weak transcription	Fetal Brain Male	brain
5	chr1:211467800-211494200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr1:211474800-211497000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:211478600-211499800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr1:211483600-211499600	Weak transcription	Fetal Heart	heart
9	chr1:211486400-211499400	Weak transcription	Stomach Mucosa	stomach
10	chr1:211486400-211500200	Weak transcription	Small Intestine	intestine
11	chr1:211487200-211496600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr1:211487200-211497000	Weak transcription	Fetal Stomach	stomach
13	chr1:211487200-211498800	Weak transcription	Thymus	Thymus
14	chr1:211487200-211499400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr1:211487200-211499600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:211487200-211499600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:211487200-211499600	Weak transcription	Brain Angular Gyrus	brain
18	chr1:211487200-211499600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr1:211487200-211499600	Weak transcription	Fetal Intestine Small	intestine
20	chr1:211487200-211499600	Weak transcription	Gastric	stomach
21	chr1:211487200-211499600	Weak transcription	Left Ventricle	heart
22	chr1:211487200-211499600	Weak transcription	Lung	lung
23	chr1:211487200-211499600	Weak transcription	Pancreas	Pancrea
24	chr1:211487200-211499800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr1:211487200-211499800	Weak transcription	Aorta	Aorta
26	chr1:211487200-211499800	Weak transcription	Esophagus	oesophagus
27	chr1:211487200-211499800	Weak transcription	Ovary	ovary
28	chr1:211487200-211499800	Weak transcription	Right Ventricle	heart
29	chr1:211487200-211500200	Weak transcription	Spleen	Spleen
30	chr1:211487400-211499600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:211487400-211499600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr1:211487400-211499600	Weak transcription	Brain Anterior Caudate	brain
33	chr1:211487400-211499600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr1:211487400-211499600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr1:211487400-211499800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr1:211487400-211499800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr1:211487400-211499800	Weak transcription	HSMMtube	muscle
38	chr1:211487600-211499600	Weak transcription	Brain Hippocampus Middle	brain
39	chr1:211487600-211499600	Weak transcription	NHLF	lung
40	chr1:211488000-211499600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr1:211488000-211499600	Weak transcription	Brain Substantia Nigra	brain
42	chr1:211488200-211494200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr1:211488200-211496200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr1:211488200-211496800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr1:211488200-211499000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr1:211488200-211499400	Weak transcription	Rectal Smooth Muscle	rectum
47	chr1:211488200-211499600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr1:211488400-211499400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr1:211488600-211499600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr1:211488600-211499600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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