Variant report

Variant	rs6541152
Chromosome Location	chr1:220757505-220757506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220719227..220721697-chr1:220755682..220758368,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10495150	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap];0.92[YRI][hapmap]
rs1073461	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11803495	1.00[EUR][1000 genomes]
rs1193031	1.00[CEU][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes]
rs12070516	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap]
rs12123306	1.00[CHB][hapmap]
rs1337571	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2786612	1.00[CEU][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59609557	1.00[EUR][1000 genomes]
rs6541153	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660022	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs6667072	1.00[EUR][1000 genomes]
rs6668644	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6669644	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6672055	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6676051	1.00[CEU][hapmap]
rs6676985	1.00[ASN][1000 genomes]
rs6696723	0.87[EUR][1000 genomes]
rs73093505	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093521	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093530	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73101842	0.87[EUR][1000 genomes]
rs73101870	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73107667	1.00[EUR][1000 genomes]
rs7512507	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7518985	1.00[CEU][hapmap]
rs7547630	1.00[CEU][hapmap]
rs7547728	1.00[CEU][hapmap]
rs7556342	1.00[CEU][hapmap]
rs767374	1.00[EUR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220748000-220762200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:220748200-220762200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:220748200-220769200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:220748400-220762400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr1:220748400-220767200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:220748400-220773200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:220748600-220769800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:220748800-220770400	Weak transcription	Fetal Muscle Leg	muscle
9	chr1:220749000-220767000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr1:220749800-220799000	Weak transcription	Aorta	Aorta
11	chr1:220750000-220767000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:220750400-220767000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:220751000-220758600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr1:220751200-220763200	Weak transcription	Fetal Brain Female	brain
15	chr1:220751800-220762400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:220751800-220799000	Weak transcription	Fetal Stomach	stomach
17	chr1:220752400-220762800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:220752400-220772200	Weak transcription	Fetal Brain Male	brain
19	chr1:220752400-220775000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:220752600-220762400	Weak transcription	Adipose Nuclei	Adipose
21	chr1:220752600-220764000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr1:220752600-220768800	Weak transcription	Esophagus	oesophagus
23	chr1:220752600-220808600	Weak transcription	Left Ventricle	heart
24	chr1:220753000-220763200	Weak transcription	Fetal Heart	heart
25	chr1:220753200-220766400	Weak transcription	HMEC	breast
26	chr1:220753400-220778400	Weak transcription	NHEK	skin
27	chr1:220753800-220762200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr1:220753800-220767000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr1:220754000-220759000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr1:220754800-220764000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr1:220756000-220767000	Weak transcription	Brain Germinal Matrix	brain
32	chr1:220756000-220790800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr1:220756600-220761200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr1:220756600-220767200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr1:220756600-220775000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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