Variant report

Variant	rs6541155
Chromosome Location	chr1:220839702-220839703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220835982..220838164-chr1:220838675..220841663,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225782	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1073460	0.94[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap]
rs10779414	0.84[CEU][hapmap]
rs12048541	0.83[CEU][hapmap];0.91[CHB][hapmap]
rs12410279	0.86[ASN][1000 genomes]
rs17007885	0.83[CEU][hapmap];0.91[CHB][hapmap]
rs1933002	1.00[ASW][hapmap];0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.82[AFR][1000 genomes]
rs1933008	0.95[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2253641	1.00[ASW][hapmap];0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.83[ASN][1000 genomes]
rs2378401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2378402	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2589588	0.94[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap]
rs2786601	0.94[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap]
rs2786604	0.94[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs2786607	0.94[CEU][hapmap]
rs2786613	0.94[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.82[AFR][1000 genomes]
rs2786619	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2993209	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3737296	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3806329	0.82[CHB][hapmap];0.85[CHD][hapmap]
rs4011894	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs4846657	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61830219	0.91[ASN][1000 genomes]
rs6677302	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6699189	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6699196	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7514431	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9431262	0.82[AFR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220791200-220841200	Weak transcription	HMEC	breast
2	chr1:220828800-220839800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:220829400-220847200	Weak transcription	Right Ventricle	heart
4	chr1:220829600-220845800	Weak transcription	Fetal Heart	heart
5	chr1:220830600-220840200	Weak transcription	Fetal Brain Male	brain
6	chr1:220831400-220845800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:220835600-220839800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:220835600-220840000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:220835600-220840800	Weak transcription	Fetal Brain Female	brain
10	chr1:220836200-220842800	Weak transcription	Adipose Nuclei	Adipose
11	chr1:220836600-220840000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:220838200-220840400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr1:220839400-220840000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr1:220839400-220840200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr1:220839600-220839800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:220839600-220839800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr1:220839600-220839800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr1:220839600-220840000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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