Variant report

Variant	rs6541394
Chromosome Location	chr1:94222924-94222925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:94216403..94218714-chr1:94221933..94224075,2	MCF-7	breast:
2	chr1:94145323..94148892-chr1:94219465..94224318,4	MCF-7	breast:
3	chr1:94221637..94224412-chr1:94243135..94245798,2	MCF-7	breast:
4	chr1:94221851..94223407-chr1:94225260..94226777,2	K562	blood:
5	chr1:94220471..94223351-chr1:94224918..94226777,2	K562	blood:

Variant related genes	Relation type
ENSG00000137936	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10489605	1.00[CHB][hapmap]
rs10874795	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165001	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165019	0.96[EUR][1000 genomes]
rs12076307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12079584	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17110394	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17110408	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17304770	1.00[CHB][hapmap]
rs4526623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4615846	0.93[EUR][1000 genomes]
rs61781049	0.86[ASN][1000 genomes]
rs61781051	0.86[ASN][1000 genomes]
rs61781053	0.86[ASN][1000 genomes]
rs61782452	0.89[EUR][1000 genomes]
rs6660794	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6671839	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6689215	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6689746	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6703468	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs717913	1.00[CEU][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72967397	0.96[EUR][1000 genomes]
rs7523682	0.86[ASN][1000 genomes]
rs7555914	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94216000-94224800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:94216400-94223800	Weak transcription	Fetal Intestine Small	intestine
3	chr1:94216800-94223000	Enhancers	Osteobl	bone
4	chr1:94216800-94224400	Weak transcription	Right Atrium	heart
5	chr1:94217600-94223200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:94218000-94223200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:94218000-94223800	Weak transcription	Thymus	Thymus
8	chr1:94218000-94224200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:94218800-94223600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:94218800-94225200	Enhancers	NHLF	lung
11	chr1:94219600-94223800	Weak transcription	Spleen	Spleen
12	chr1:94219600-94224200	Weak transcription	Fetal Thymus	thymus
13	chr1:94219800-94223800	Enhancers	Hela-S3	cervix
14	chr1:94219800-94224800	Weak transcription	Brain Hippocampus Middle	brain
15	chr1:94219800-94226200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:94219800-94231600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:94220000-94223200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:94220000-94224200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr1:94220000-94224800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr1:94220000-94254200	Weak transcription	Aorta	Aorta
21	chr1:94220200-94224200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr1:94220600-94223800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr1:94220600-94224200	Weak transcription	HSMMtube	muscle
24	chr1:94221200-94225600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr1:94221200-94225600	Enhancers	Fetal Lung	lung
26	chr1:94221200-94226600	Enhancers	Placenta	Placenta
27	chr1:94221400-94224200	Weak transcription	NH-A	brain
28	chr1:94221400-94225600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:94221400-94225600	Genic enhancers	HMEC	breast
30	chr1:94221600-94223000	Enhancers	Psoas Muscle	Psoas
31	chr1:94221600-94224400	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr1:94221800-94223000	Genic enhancers	NHEK	skin
33	chr1:94221800-94223600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr1:94221800-94223800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr1:94222200-94224400	Weak transcription	A549	lung
36	chr1:94222200-94225000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr1:94222400-94224000	Enhancers	HepG2	liver
38	chr1:94222400-94224200	Weak transcription	Fetal Stomach	stomach
39	chr1:94222400-94225000	Enhancers	Fetal Muscle Leg	muscle
40	chr1:94222400-94225600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr1:94222400-94225800	Enhancers	Adipose Nuclei	Adipose
42	chr1:94222400-94228200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr1:94222600-94223000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr1:94222600-94224200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr1:94222600-94224200	Weak transcription	HSMM	muscle
46	chr1:94222600-94225200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr1:94222600-94225600	Enhancers	Fetal Muscle Trunk	muscle
48	chr1:94222600-94225600	Enhancers	Lung	lung
49	chr1:94222800-94223600	Enhancers	Brain Anterior Caudate	brain
50	chr1:94222800-94223800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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