The 2.0 version of rSNPBase

Variant report

Variant rs6541397
Chromosome Location chr1:94268040-94268041
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:32 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94262400-94270200 Enhancers Hela-S3 cervix
2 chr1:94264400-94269200 Weak transcription NHEK skin
3 chr1:94264400-94270000 Weak transcription Aorta Aorta
4 chr1:94264600-94269800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr1:94264600-94270000 Weak transcription HSMMtube muscle
6 chr1:94264800-94268600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr1:94264800-94269200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
8 chr1:94264800-94269600 Weak transcription HSMM muscle
9 chr1:94265000-94268200 Weak transcription HUVEC blood vessel
10 chr1:94265000-94269200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
11 chr1:94265000-94269200 Weak transcription NH-A brain
12 chr1:94266200-94269400 Enhancers HepG2 liver
13 chr1:94266800-94268200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
14 chr1:94267200-94268800 Weak transcription A549 lung
15 chr1:94267200-94269800 Enhancers Placenta Placenta
16 chr1:94267400-94269800 Weak transcription Fetal Lung lung
17 chr1:94267600-94270200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr1:94267600-94273400 Weak transcription Lung lung
19 chr1:94267800-94268200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr1:94267800-94268200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr1:94267800-94268200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr1:94267800-94268200 Enhancers Osteobl bone
23 chr1:94267800-94268400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr1:94267800-94268400 Enhancers Muscle Satellite Cultured Cells --
25 chr1:94267800-94268400 Enhancers HMEC breast
26 chr1:94267800-94268400 Enhancers NHLF lung
27 chr1:94268000-94268200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr1:94268000-94268200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr1:94268000-94268200 Enhancers Small Intestine intestine
30 chr1:94268000-94268800 Enhancers Right Atrium heart
31 chr1:94268000-94269800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr1:94268000-94270200 Enhancers NHDF-Ad bronchial

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Last update: Aug 31, 2015