Variant report

Variant	rs6544066
Chromosome Location	chr2:37543371-37543372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37541321..37543959-chr2:37558220..37560701,2	K562	blood:

Variant related genes	Relation type
ENSG00000207364	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10177176	0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10190959	0.95[CHB][hapmap];0.91[ASN][1000 genomes]
rs1056021	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap]
rs11124574	0.86[CHB][hapmap];0.88[CHD][hapmap];0.80[ASN][1000 genomes]
rs11124578	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs1158218	0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs1158219	0.95[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs11682607	0.86[ASN][1000 genomes]
rs11689794	0.89[ASN][1000 genomes]
rs12616151	0.88[ASN][1000 genomes]
rs12618410	0.95[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs12712532	0.87[ASN][1000 genomes]
rs13015451	0.88[ASN][1000 genomes]
rs13030789	0.83[ASN][1000 genomes]
rs13420463	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1477055	0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap]
rs17020490	0.96[ASN][1000 genomes]
rs1989172	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2041836	0.85[CHB][hapmap]
rs2268987	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2300881	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2300884	0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs2372993	0.83[ASN][1000 genomes]
rs3770757	0.98[ASN][1000 genomes]
rs3770759	0.86[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs4581878	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4670194	0.94[ASN][1000 genomes]
rs4670195	0.86[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4670688	0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.99[ASN][1000 genomes]
rs4670689	0.95[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs4998429	0.85[JPT][hapmap]
rs56774710	0.93[ASN][1000 genomes]
rs57361399	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs67467920	0.90[ASN][1000 genomes]
rs71398224	0.97[ASN][1000 genomes]
rs72792829	0.85[ASN][1000 genomes]
rs74177070	0.89[ASN][1000 genomes]
rs7568510	0.87[ASN][1000 genomes]
rs7570547	0.89[ASN][1000 genomes]
rs7584565	0.87[ASN][1000 genomes]
rs9309004	0.90[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs6544066	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL
rs6544066	QPCT	cis	lymphoblastoid	seeQTL
rs6544066	EIF2AK2	cis	parietal	SCAN
rs6544066	QPCT	cis	parietal	SCAN
rs6544066	CEBPZ	cis	lymphoblastoid	seeQTL

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37484600-37550400	Weak transcription	Right Ventricle	heart
2	chr2:37502800-37543400	Weak transcription	Esophagus	oesophagus
3	chr2:37509000-37550800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr2:37511000-37550800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:37515800-37545400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr2:37516800-37545200	Weak transcription	Fetal Kidney	kidney
7	chr2:37518800-37545400	Weak transcription	NH-A	brain
8	chr2:37519000-37549400	Weak transcription	HSMM	muscle
9	chr2:37519200-37543800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr2:37519200-37545600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr2:37520200-37543400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr2:37520200-37545400	Weak transcription	Ovary	ovary
13	chr2:37520200-37549600	Weak transcription	Fetal Muscle Leg	muscle
14	chr2:37520400-37549600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr2:37520400-37550400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr2:37529400-37545600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:37529600-37545600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr2:37529600-37545600	Weak transcription	NHDF-Ad	bronchial
19	chr2:37530400-37548400	Weak transcription	K562	blood
20	chr2:37530600-37548200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr2:37530600-37550400	Weak transcription	Thymus	Thymus
22	chr2:37530800-37548600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr2:37530800-37549600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr2:37531000-37548600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr2:37531600-37543400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr2:37533200-37550400	Weak transcription	Fetal Intestine Large	intestine
27	chr2:37533400-37544800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr2:37533800-37546000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr2:37533800-37549400	Weak transcription	Fetal Intestine Small	intestine
30	chr2:37534000-37550400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr2:37534400-37550400	Weak transcription	Lung	lung
32	chr2:37534400-37550600	Weak transcription	Left Ventricle	heart
33	chr2:37534600-37548400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr2:37534800-37548400	Weak transcription	A549	lung
35	chr2:37534800-37548800	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr2:37535000-37544800	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr2:37535000-37548400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr2:37535000-37548600	Weak transcription	HUVEC	blood vessel
39	chr2:37535000-37549400	Weak transcription	Hela-S3	cervix
40	chr2:37535400-37548600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr2:37537000-37550400	Weak transcription	HSMMtube	muscle
42	chr2:37538400-37543400	Weak transcription	Aorta	Aorta
43	chr2:37538400-37544600	Weak transcription	NHEK	skin
44	chr2:37538400-37545000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr2:37538400-37549600	Weak transcription	Psoas Muscle	Psoas
46	chr2:37538600-37544800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr2:37538600-37548600	Weak transcription	Liver	Liver
48	chr2:37538800-37543400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr2:37539000-37548400	Weak transcription	Primary hematopoietic stem cells	blood
50	chr2:37539200-37545600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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