The 2.0 version of rSNPBase

Variant report

Variant rs6545487
Chromosome Location chr2:55540164-55540165
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:114 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:55509000-55541200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr2:55509400-55545200 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr2:55510000-55541600 Weak transcription Esophagus oesophagus
4 chr2:55510000-55553600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr2:55510000-55578800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
6 chr2:55510200-55542200 Weak transcription Fetal Intestine Large intestine
7 chr2:55510200-55559000 Weak transcription Psoas Muscle Psoas
8 chr2:55510200-55616800 Weak transcription Fetal Intestine Small intestine
9 chr2:55510800-55542200 Weak transcription Rectal Smooth Muscle rectum
10 chr2:55511000-55540600 Weak transcription Spleen Spleen
11 chr2:55511200-55542200 Weak transcription Skeletal Muscle Male skeletal muscle
12 chr2:55511200-55547000 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr2:55512000-55549800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr2:55512400-55577400 Weak transcription Right Ventricle heart
15 chr2:55512600-55546000 Weak transcription Small Intestine intestine
16 chr2:55514800-55549600 Strong transcription iPS-20b Cell Line embryonic stem cell
17 chr2:55515800-55550400 Strong transcription HUES64 Cell Line embryonic stem cell
18 chr2:55518600-55591400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr2:55519800-55579000 Weak transcription Primary B cells from cord blood blood
20 chr2:55520000-55541200 Weak transcription Primary T helper cells fromperipheralblood blood
21 chr2:55520200-55554400 Weak transcription Duodenum Mucosa Duodenum
22 chr2:55520400-55591200 Strong transcription Monocytes-CD14+_RO01746 blood
23 chr2:55521400-55591000 Strong transcription Primary monocytes fromperipheralblood blood
24 chr2:55523000-55548000 Weak transcription Sigmoid Colon Sigmoid Colon
25 chr2:55523000-55584400 Weak transcription Aorta Aorta
26 chr2:55523200-55584800 Weak transcription Primary T cells fromperipheralblood blood
27 chr2:55523600-55541000 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr2:55523600-55542000 Weak transcription Fetal Brain Male brain
29 chr2:55523600-55548000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
30 chr2:55523600-55600600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
31 chr2:55523800-55541000 Weak transcription H9 Cell Line embryonic stem cell
32 chr2:55524000-55541200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
33 chr2:55524800-55543200 Strong transcription iPS-18 Cell Line embryonic stem cell
34 chr2:55524800-55549400 Strong transcription Primary hematopoietic stem cells short term culture blood
35 chr2:55526400-55549600 Strong transcription HUES48 Cell Line embryonic stem cell
36 chr2:55527000-55546400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
37 chr2:55527400-55541000 Weak transcription Brain Anterior Caudate brain
38 chr2:55528600-55542000 Weak transcription iPS-15b Cell Line embryonic stem cell
39 chr2:55529400-55544400 Weak transcription Placenta Placenta
40 chr2:55532200-55543800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
41 chr2:55533000-55542000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
42 chr2:55533000-55544000 Weak transcription Pancreatic Islets Pancreatic Islet
43 chr2:55534200-55589400 Weak transcription Pancreas Pancrea
44 chr2:55534800-55544200 Strong transcription Liver Liver
45 chr2:55535200-55549600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr2:55535200-55549600 Strong transcription Dnd41 blood
47 chr2:55535400-55540200 Weak transcription Fetal Stomach stomach
48 chr2:55535400-55540400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
49 chr2:55535400-55546400 Strong transcription HepG2 liver
50 chr2:55535400-55548000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015