Variant report

Variant	rs6548778
Chromosome Location	chr3:81956051-81956052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs13313910	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13314900	0.91[CEU][hapmap];0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs13327783	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17479347	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1851922	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1973802	0.91[EUR][1000 genomes]
rs2680275	0.91[EUR][1000 genomes]
rs2680276	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs28553548	0.80[EUR][1000 genomes]
rs28668209	0.81[EUR][1000 genomes]
rs34665337	0.80[EUR][1000 genomes]
rs3772886	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs57555994	0.85[EUR][1000 genomes]
rs59419728	0.85[EUR][1000 genomes]
rs62265681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62265683	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62265684	0.85[EUR][1000 genomes]
rs62265686	0.85[EUR][1000 genomes]
rs62265712	0.81[EUR][1000 genomes]
rs62267115	0.82[EUR][1000 genomes]
rs62267150	0.90[EUR][1000 genomes]
rs6768673	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6776410	0.87[CEU][hapmap]
rs6785740	0.90[EUR][1000 genomes]
rs6787635	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6791629	0.91[EUR][1000 genomes]
rs6798822	0.91[EUR][1000 genomes]
rs6804453	0.81[EUR][1000 genomes]
rs6804613	0.90[EUR][1000 genomes]
rs6804697	0.85[EUR][1000 genomes]
rs7623056	0.87[CEU][hapmap]
rs7633528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7634830	0.85[EUR][1000 genomes]
rs9813371	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs9816203	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9820490	0.81[EUR][1000 genomes]
rs9825400	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9831301	0.90[EUR][1000 genomes]
rs9831360	0.85[EUR][1000 genomes]
rs9833851	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9835279	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9838598	0.92[EUR][1000 genomes]
rs9851559	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs9859620	0.81[EUR][1000 genomes]
rs9863322	0.82[EUR][1000 genomes]
rs9865893	0.82[EUR][1000 genomes]
rs9870979	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9871474	0.87[CEU][hapmap]
rs9874754	0.85[EUR][1000 genomes]
rs9875335	0.81[EUR][1000 genomes]
rs9985397	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81953600-81959000	Weak transcription	Psoas Muscle	Psoas

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