The 2.0 version of rSNPBase

Variant report

Variant rs6549172
Chromosome Location chr3:69060344-69060345
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:69019600-69061800 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr3:69021400-69061600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr3:69024800-69061600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr3:69024800-69061800 Weak transcription Primary B cells from peripheral blood blood
5 chr3:69025200-69062000 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr3:69028200-69061400 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr3:69030400-69061400 Weak transcription Stomach Mucosa stomach
8 chr3:69036200-69061200 Weak transcription Fetal Thymus thymus
9 chr3:69036200-69061400 Weak transcription A549 lung
10 chr3:69036400-69061600 Weak transcription Fetal Kidney kidney
11 chr3:69037000-69061400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
12 chr3:69037000-69061600 Weak transcription GM12878-XiMat blood
13 chr3:69037000-69062000 Weak transcription Primary T cells from cord blood blood
14 chr3:69037000-69062200 Weak transcription Small Intestine intestine
15 chr3:69037600-69062000 Weak transcription Primary B cells from cord blood blood
16 chr3:69040600-69060400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr3:69042400-69062000 Weak transcription Primary neutrophils fromperipheralblood blood
18 chr3:69046600-69061600 Weak transcription K562 blood
19 chr3:69047000-69061400 Weak transcription Spleen Spleen
20 chr3:69051400-69061600 Strong transcription Primary hematopoietic stem cells short term culture blood
21 chr3:69052600-69061200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr3:69052800-69061800 Weak transcription Gastric stomach
23 chr3:69053200-69061400 Weak transcription Thymus Thymus
24 chr3:69053400-69060800 Strong transcription Primary hematopoietic stem cells blood
25 chr3:69053400-69061800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr3:69053600-69061800 Weak transcription Ovary ovary
27 chr3:69054000-69060600 Weak transcription Pancreas Pancrea
28 chr3:69054400-69062000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
29 chr3:69054800-69061600 Weak transcription Primary T helper cells fromperipheralblood blood
30 chr3:69054800-69061800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
31 chr3:69055800-69060600 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr3:69055800-69061600 Weak transcription Fetal Stomach stomach
33 chr3:69055800-69061800 Weak transcription Fetal Intestine Small intestine
34 chr3:69056000-69061200 Weak transcription Hela-S3 cervix
35 chr3:69056200-69061400 Weak transcription Primary T helper cells PMA-I stimulated --
36 chr3:69056200-69061800 Weak transcription Fetal Intestine Large intestine
37 chr3:69056400-69061600 Weak transcription Primary T helper naive cells fromperipheralblood blood
38 chr3:69056400-69061800 Weak transcription Primary monocytes fromperipheralblood blood
39 chr3:69057400-69060400 Genic enhancers HMEC breast
40 chr3:69057400-69060800 Genic enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr3:69057400-69061200 Enhancers Colon Smooth Muscle Colon
42 chr3:69057600-69061200 Weak transcription Fetal Muscle Trunk muscle
43 chr3:69057800-69061400 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr3:69058000-69060400 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr3:69058000-69060800 Genic enhancers Skeletal Muscle Male skeletal muscle
46 chr3:69058000-69061000 Genic enhancers Muscle Satellite Cultured Cells --
47 chr3:69058000-69061000 Genic enhancers Skeletal Muscle Female skeletal muscle
48 chr3:69058000-69061200 Transcr. at gene 5' and 3' Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr3:69058000-69061200 Enhancers Fetal Lung lung
50 chr3:69058000-69062000 Enhancers ES-UCSF4 Cell Line embryonic stem cell

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Last update: Aug 31, 2015