Variant report

Variant	rs6550288
Chromosome Location	chr3:34716531-34716532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1520634	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1520644	0.81[EUR][1000 genomes]
rs1520646	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1520647	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1581334	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1582351	0.91[EUR][1000 genomes]
rs1851057	0.85[EUR][1000 genomes]
rs1894935	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2080425	0.89[EUR][1000 genomes]
rs2160468	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2884476	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4678701	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6550287	0.96[EUR][1000 genomes]
rs6550289	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6799184	0.87[EUR][1000 genomes]
rs6803249	0.89[EUR][1000 genomes]
rs7624722	0.91[EUR][1000 genomes]
rs7625714	0.91[EUR][1000 genomes]
rs7625770	0.91[EUR][1000 genomes]
rs7629903	0.81[EUR][1000 genomes]
rs7636733	0.91[EUR][1000 genomes]
rs918085	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519548	chr3:34683998-34718800	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv1816528	chr3:34683998-34757534	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv525435	chr3:34698297-34718800	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34711400-34718000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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