Variant report

Variant	rs6556888
Chromosome Location	chr5:95177907-95177908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:95177864..95180977-chr5:95197821..95200225,3	MCF-7	breast:
2	chr5:95116606..95117631-chr5:95177527..95180416,16	MCF-7	breast:
3	chr5:94978554..94980153-chr5:95176537..95179055,2	MCF-7	breast:
4	chr5:95053439..95055836-chr5:95177234..95179999,3	MCF-7	breast:
5	chr5:95174305..95176507-chr5:95176517..95178834,2	MCF-7	breast:
6	chr5:95061804..95065801-chr5:95176790..95180360,3	MCF-7	breast:
7	chr5:94978334..94983270-chr5:95177087..95179816,5	K562	blood:
8	chr5:95177863..95179766-chr5:95206885..95209733,2	K562	blood:
9	chr5:95064707..95068604-chr5:95176347..95180425,6	MCF-7	breast:
10	chr5:95165646..95168602-chr5:95177618..95179620,3	MCF-7	breast:
11	chr5:94982315..94985033-chr5:95175473..95179911,4	MCF-7	breast:
12	chr5:94980822..94983270-chr5:95176629..95179816,3	K562	blood:
13	chr5:95157822..95159922-chr5:95176328..95178833,2	K562	blood:
14	chr5:95175808..95177943-chr5:95180216..95182740,2	MCF-7	breast:
15	chr5:95066611..95070336-chr5:95176781..95179613,3	MCF-7	breast:
16	chr5:95173988..95176848-chr5:95177535..95179576,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164292	Chromatin interaction
ENSG00000175449	Chromatin interaction
ENSG00000173221	Chromatin interaction
ENSG00000250240	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10055875	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10067941	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10079710	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12520664	0.96[ASN][1000 genomes]
rs2161312	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2546196	0.96[ASN][1000 genomes]
rs3797207	0.86[EUR][1000 genomes]
rs41470049	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6420125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6556887	0.95[ASN][1000 genomes]
rs6882301	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6883552	0.96[ASN][1000 genomes]
rs6884979	0.96[ASN][1000 genomes]
rs7702848	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7703084	0.95[ASN][1000 genomes]
rs7708375	0.96[ASN][1000 genomes]
rs7716279	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7719227	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830409	chr5:95006686-95204496	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1015180	chr5:95134357-95286446	Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95171800-95178200	Weak transcription	Right Ventricle	heart
2	chr5:95171800-95178800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:95171800-95178800	Weak transcription	Left Ventricle	heart
4	chr5:95171800-95185800	Weak transcription	Pancreas	Pancrea
5	chr5:95172200-95180400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:95172600-95178600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr5:95172600-95178600	Weak transcription	Spleen	Spleen
8	chr5:95172800-95178000	Weak transcription	Dnd41	blood
9	chr5:95172800-95178200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr5:95172800-95178200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr5:95173000-95178200	Weak transcription	Primary T cells from cord blood	blood
12	chr5:95173000-95178200	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr5:95173200-95178800	Enhancers	HepG2	liver
14	chr5:95173400-95180800	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr5:95174400-95180000	Enhancers	Primary B cells from cord blood	blood
16	chr5:95174800-95178800	Weak transcription	Brain Anterior Caudate	brain
17	chr5:95174800-95178800	Weak transcription	Brain Substantia Nigra	brain
18	chr5:95175200-95178200	Weak transcription	Fetal Thymus	thymus
19	chr5:95175200-95178800	Enhancers	GM12878-XiMat	blood
20	chr5:95175400-95178000	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr5:95175400-95179800	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr5:95175600-95178800	Enhancers	Hela-S3	cervix
23	chr5:95175800-95178000	Weak transcription	Fetal Intestine Large	intestine
24	chr5:95175800-95178200	Weak transcription	Lung	lung
25	chr5:95175800-95182200	Weak transcription	Esophagus	oesophagus
26	chr5:95176000-95178000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr5:95176000-95178400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr5:95176000-95180200	Weak transcription	Gastric	stomach
29	chr5:95176200-95181200	Enhancers	Placenta	Placenta
30	chr5:95176400-95178200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr5:95176400-95180400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr5:95176600-95178000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr5:95176600-95178400	Enhancers	Stomach Mucosa	stomach
34	chr5:95176800-95178200	Weak transcription	Psoas Muscle	Psoas
35	chr5:95176800-95178600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr5:95176800-95179200	Weak transcription	Brain Hippocampus Middle	brain
37	chr5:95176800-95179400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr5:95176800-95179400	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr5:95176800-95180000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr5:95177000-95180200	Enhancers	Adipose Nuclei	Adipose
41	chr5:95177000-95180600	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr5:95177000-95181400	Enhancers	Primary hematopoietic stem cells	blood
43	chr5:95177200-95178400	Weak transcription	Primary B cells from peripheral blood	blood
44	chr5:95177200-95179000	Enhancers	Colonic Mucosa	Colon
45	chr5:95177200-95179400	Enhancers	NHLF	lung
46	chr5:95177200-95180000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr5:95177200-95180200	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr5:95177400-95178400	Enhancers	A549	lung
49	chr5:95177400-95179400	Enhancers	Muscle Satellite Cultured Cells	--
50	chr5:95177400-95179600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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