Variant report

Variant	rs6557543
Chromosome Location	chr6:150851129-150851130
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11961060	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4131416	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4131417	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4276514	0.80[AMR][1000 genomes]
rs4282419	0.80[ASN][1000 genomes]
rs4311527	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4317421	0.80[ASN][1000 genomes]
rs4333428	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62432560	0.84[ASN][1000 genomes]
rs62432561	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6904218	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs6911586	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6913362	0.86[ASN][1000 genomes]
rs6918187	0.90[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6919129	0.90[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6925854	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs7341223	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7341280	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7453224	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7749721	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7756438	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766048	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7767400	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7773743	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7775952	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9322262	0.86[ASN][1000 genomes]
rs9322263	1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322265	0.94[ASN][1000 genomes]
rs9371454	0.84[ASN][1000 genomes]
rs9372056	0.84[ASN][1000 genomes]
rs9372063	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs9372071	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9372072	0.83[ASN][1000 genomes]
rs9383828	0.84[ASN][1000 genomes]
rs9384547	0.83[ASN][1000 genomes]
rs9384548	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9384550	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9384556	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9384557	0.81[ASN][1000 genomes]
rs9397324	0.84[ASN][1000 genomes]
rs9397325	0.83[ASN][1000 genomes]
rs9397333	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9398011	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9398014	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9398015	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9398016	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9480467	0.80[ASN][1000 genomes]
rs9480469	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9480470	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9480471	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9480472	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv464079	chr6:150836676-150873766	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv604850	chr6:150836676-150873766	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6557543	PPIL4	cis	Heart Left Ventricle	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150849800-150851400	Enhancers	Placenta Amnion	Placenta Amnion
2	chr6:150850400-150854400	Weak transcription	Fetal Heart	heart
3	chr6:150850400-150858000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:150850600-150856400	Weak transcription	Fetal Lung	lung
5	chr6:150850600-150858200	Weak transcription	Stomach Smooth Muscle	stomach

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