Variant report

Variant	rs655779
Chromosome Location	chr11:56300181-56300182
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10400288	0.94[ASN][1000 genomes]
rs10736677	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10750820	0.94[ASN][1000 genomes]
rs10792038	1.00[CEU][hapmap]
rs10792040	0.97[ASN][1000 genomes]
rs10792043	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896480	0.91[ASN][1000 genomes]
rs11228212	0.94[ASN][1000 genomes]
rs11228676	1.00[CEU][hapmap]
rs11228684	0.88[ASN][1000 genomes]
rs11228686	0.88[ASN][1000 genomes]
rs11228687	0.88[ASN][1000 genomes]
rs11228693	0.82[ASN][1000 genomes]
rs11228694	0.82[ASN][1000 genomes]
rs11228698	0.82[ASN][1000 genomes]
rs11228701	0.82[ASN][1000 genomes]
rs11228706	0.82[ASN][1000 genomes]
rs11228708	0.82[ASN][1000 genomes]
rs12222989	0.82[ASN][1000 genomes]
rs12418150	0.91[ASN][1000 genomes]
rs12418301	0.88[ASN][1000 genomes]
rs1605924	0.88[ASN][1000 genomes]
rs17150739	1.00[ASN][1000 genomes]
rs1945196	1.00[ASN][1000 genomes]
rs1945210	0.94[ASN][1000 genomes]
rs2202932	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2511143	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2865516	0.82[ASN][1000 genomes]
rs3938998	0.94[ASN][1000 genomes]
rs4500505	1.00[ASN][1000 genomes]
rs4939034	0.88[ASN][1000 genomes]
rs4939035	0.88[ASN][1000 genomes]
rs4939043	0.94[ASN][1000 genomes]
rs4939061	0.97[ASN][1000 genomes]
rs583589	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs584608	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs588805	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs592744	1.00[ASN][1000 genomes]
rs596212	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61710550	0.82[ASN][1000 genomes]
rs637912	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs642630	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs643384	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs654634	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs656565	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6591381	0.85[ASN][1000 genomes]
rs674431	1.00[CEU][hapmap]
rs676901	1.00[ASN][1000 genomes]
rs688832	1.00[CEU][hapmap]
rs7939886	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	nsv1046487	chr11:56228761-56310644	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv468576	chr11:56299930-56420029	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv555099	chr11:56299930-56420029	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56298400-56302000	Enhancers	Fetal Intestine Large	intestine
2	chr11:56299400-56301200	Enhancers	Fetal Intestine Small	intestine
3	chr11:56299800-56300600	Enhancers	Colonic Mucosa	Colon
4	chr11:56299800-56300600	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr11:56299800-56301000	Enhancers	Rectal Mucosa Donor 31	rectum

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