Variant report

Variant	rs6561633
Chromosome Location	chr13:51885373-51885374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1570551	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4566051	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6561632	0.82[EUR][1000 genomes]
rs927607	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs927608	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9526747	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9535639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535641	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535647	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs966777	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51853000-51889600	Weak transcription	Brain Angular Gyrus	brain
2	chr13:51867600-51910800	Weak transcription	Pancreas	Pancrea
3	chr13:51877000-51887800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:51877000-51889200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:51877600-51886600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr13:51877800-51890000	Weak transcription	Lung	lung
7	chr13:51879800-51889200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr13:51880000-51885400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr13:51881600-51889400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr13:51881800-51889000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr13:51882200-51886200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr13:51883400-51887800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr13:51883400-51889000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr13:51883400-51889200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr13:51885000-51885400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr13:51885000-51885800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr13:51885000-51885800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr13:51885000-51886800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr13:51885200-51885400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr13:51885200-51885600	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr13:51885200-51885600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr13:51885200-51885600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr13:51885200-51885600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr13:51885200-51885600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr13:51885200-51885800	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr13:51885200-51885800	Enhancers	Brain Hippocampus Middle	brain
27	chr13:51885200-51886200	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr13:51885200-51886600	Enhancers	Cortex derived primary cultured neurospheres	brain

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