Variant report

Variant	rs6569556
Chromosome Location	chr6:129053081-129053082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:128839626..128841774-chr6:129051406..129053411,2	MCF-7	breast:
2	chr6:128839207..128843653-chr6:129048714..129054642,7	MCF-7	breast:
3	chr6:129047509..129050452-chr6:129051618..129053912,2	K562	blood:

Variant related genes	Relation type
ENSG00000152894	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1082316	1.00[ASN][1000 genomes]
rs1281243	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs1281244	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1281247	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs28513684	0.86[EUR][1000 genomes]
rs55986700	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60999252	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72975313	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72975384	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72975393	0.94[EUR][1000 genomes]
rs72975394	0.94[EUR][1000 genomes]
rs72975400	0.94[EUR][1000 genomes]
rs72977310	0.94[EUR][1000 genomes]
rs774277	1.00[ASN][1000 genomes]
rs774283	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9321130	0.94[EUR][1000 genomes]
rs9321131	0.86[ASN][1000 genomes]
rs9321132	0.86[ASN][1000 genomes]
rs9385471	1.00[ASN][1000 genomes]
rs9482916	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs9482917	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9482918	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9482919	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9492055	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs9492056	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9492057	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9492059	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9492060	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9492061	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9492062	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9492063	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9492064	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9492065	1.00[CHB][hapmap]
rs9492066	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9492068	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9492069	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9492070	0.94[EUR][1000 genomes]
rs9492072	1.00[ASN][1000 genomes]
rs9492073	0.86[EUR][1000 genomes]
rs9492074	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830801	chr6:128878436-129064667	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1030330	chr6:129008538-129095108	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:129045200-129062000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:129046600-129058000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:129046800-129058000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:129047200-129055600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:129047200-129056000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:129047200-129056200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:129051800-129053600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:129052600-129053200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:129052600-129053200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:129052600-129053200	Enhancers	Fetal Heart	heart
11	chr6:129052800-129053200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:129052800-129053200	Enhancers	Brain Cingulate Gyrus	brain
13	chr6:129052800-129058200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:129053000-129054200	Weak transcription	Ovary	ovary
15	chr6:129053000-129055000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:129053000-129056000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:129053000-129058000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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