Variant report

Variant	rs6569815
Chromosome Location	chr6:132932068-132932069
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6569814	0.91[YRI][hapmap]
rs6907047	0.87[ASN][1000 genomes]
rs6939470	0.83[MEX][hapmap];0.83[YRI][hapmap]
rs7741846	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7742403	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9389015	1.00[ASW][hapmap];0.84[MEX][hapmap]
rs9402439	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6569815	VNN1	cis	multi-tissue	Pritchard

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132926200-132933600	Weak transcription	Stomach Mucosa	stomach
2	chr6:132928000-132935200	Enhancers	Fetal Intestine Small	intestine
3	chr6:132928200-132932200	Enhancers	Fetal Intestine Large	intestine
4	chr6:132929000-132933600	Weak transcription	HepG2	liver
5	chr6:132930400-132934000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:132930400-132935600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:132930800-132936200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:132931000-132934000	Weak transcription	Brain Substantia Nigra	brain
9	chr6:132931400-132932200	Enhancers	Duodenum Mucosa	Duodenum
10	chr6:132931600-132937000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:132931800-132932200	Enhancers	Small Intestine	intestine
12	chr6:132931800-132933000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:132931800-132933600	Enhancers	Liver	Liver
14	chr6:132932000-132933600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:132932000-132935600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:132932000-132937200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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