Variant report

Variant	rs6569874
Chromosome Location	chr6:133598407-133598408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12190309	0.81[ASN][1000 genomes]
rs12192839	0.93[ASN][1000 genomes]
rs2180729	0.82[ASN][1000 genomes]
rs3777796	0.84[ASN][1000 genomes]
rs3777799	0.89[ASN][1000 genomes]
rs55947866	0.93[ASN][1000 genomes]
rs56377439	0.91[ASN][1000 genomes]
rs6569873	0.81[ASN][1000 genomes]
rs6940510	0.93[ASN][1000 genomes]
rs9373041	0.86[ASN][1000 genomes]
rs9373043	0.88[ASN][1000 genomes]
rs9375948	0.81[ASN][1000 genomes]
rs9375949	0.82[ASN][1000 genomes]
rs9385640	0.81[ASN][1000 genomes]
rs9385641	0.81[ASN][1000 genomes]
rs9385642	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9389060	0.81[ASN][1000 genomes]
rs9389061	0.81[ASN][1000 genomes]
rs9389062	0.84[ASN][1000 genomes]
rs9389064	0.81[ASN][1000 genomes]
rs9399055	0.88[ASN][1000 genomes]
rs9402493	0.81[ASN][1000 genomes]
rs9402494	0.81[ASN][1000 genomes]
rs9402497	0.81[ASN][1000 genomes]
rs9402498	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470862	chr6:133492507-133600402	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv886678	chr6:133550279-133631190	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv5483	chr6:133554303-133599338	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv886679	chr6:133578733-133635272	Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133581000-133599000	Weak transcription	A549	lung
2	chr6:133594200-133598600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:133594200-133599200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:133594200-133603200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:133594200-133603800	Weak transcription	Fetal Kidney	kidney
6	chr6:133594200-133603800	Weak transcription	Psoas Muscle	Psoas
7	chr6:133594200-133607000	Weak transcription	Hela-S3	cervix
8	chr6:133594200-133612800	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:133594200-133614000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:133594200-133617200	Weak transcription	Left Ventricle	heart
11	chr6:133596600-133598800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:133598200-133599000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr6:133598200-133599000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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