Variant report

Variant	rs6571514
Chromosome Location	chr14:32862489-32862490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17408253	0.82[CHB][hapmap]
rs17486543	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs17486760	0.82[CHB][hapmap]
rs1951183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1951185	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1951681	1.00[JPT][hapmap]
rs1951682	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2383301	0.82[CHB][hapmap]
rs2891192	0.82[CHB][hapmap]
rs3784178	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3784182	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs3784187	0.89[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes]
rs56096035	0.93[EUR][1000 genomes]
rs7142538	0.91[EUR][1000 genomes]
rs7157707	0.82[YRI][hapmap]
rs8005778	1.00[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv976820	chr14:32860301-32873799	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32849000-32867400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:32854200-32866600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:32860200-32865600	Weak transcription	Left Ventricle	heart
4	chr14:32860400-32863800	Weak transcription	Fetal Heart	heart
5	chr14:32860600-32865600	Weak transcription	Brain Hippocampus Middle	brain
6	chr14:32860800-32863600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:32860800-32865600	Weak transcription	Brain Substantia Nigra	brain
8	chr14:32862000-32867000	Weak transcription	Brain Germinal Matrix	brain
9	chr14:32862400-32864400	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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