Variant report

Variant	rs6571540
Chromosome Location	chr14:33070718-33070719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10130459	0.86[GIH][hapmap]
rs10138218	1.00[ASN][1000 genomes]
rs10735738	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11156754	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11625087	0.81[CEU][hapmap];0.86[GIH][hapmap]
rs11626762	1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs12717222	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17099309	1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs17099320	1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs17099324	0.86[ASN][1000 genomes]
rs17099326	0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1956212	0.82[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs1956218	0.89[CEU][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes]
rs1956219	1.00[ASN][1000 genomes]
rs3784203	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4981992	0.92[CEU][hapmap];0.87[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4981993	0.93[ASN][1000 genomes]
rs61981363	0.96[ASN][1000 genomes]
rs61983021	0.86[ASN][1000 genomes]
rs6571541	0.88[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6571547	0.83[GIH][hapmap]
rs7146517	0.90[ASN][1000 genomes]
rs7154753	0.90[ASN][1000 genomes]
rs7156763	0.81[CEU][hapmap];0.80[AMR][1000 genomes]
rs7157328	1.00[ASN][1000 genomes]
rs7157533	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7157744	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7160156	0.82[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs73255099	0.90[ASN][1000 genomes]
rs8017249	1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs979494	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33057800-33078200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:33059400-33072000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:33064000-33071200	Weak transcription	Aorta	Aorta
4	chr14:33064600-33071400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:33064600-33071400	Weak transcription	Brain Substantia Nigra	brain
6	chr14:33064600-33071400	Weak transcription	Left Ventricle	heart
7	chr14:33064600-33071400	Weak transcription	Right Ventricle	heart
8	chr14:33064600-33074600	Weak transcription	Psoas Muscle	Psoas
9	chr14:33064600-33075600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:33064800-33070800	Weak transcription	Fetal Stomach	stomach
11	chr14:33064800-33071000	Weak transcription	Fetal Muscle Leg	muscle
12	chr14:33064800-33071600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr14:33064800-33079600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr14:33066000-33071200	Weak transcription	NHLF	lung
15	chr14:33067400-33077800	Weak transcription	HSMM	muscle
16	chr14:33067800-33071200	Weak transcription	Brain Hippocampus Middle	brain
17	chr14:33067800-33071400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr14:33068200-33071600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr14:33068600-33072000	Weak transcription	Brain Angular Gyrus	brain
20	chr14:33069800-33071000	Genic enhancers	Fetal Heart	heart
21	chr14:33069800-33071800	Strong transcription	Skeletal Muscle Male	skeletal muscle
22	chr14:33069800-33072400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr14:33069800-33080000	Weak transcription	Fetal Brain Female	brain
24	chr14:33070200-33070800	Strong transcription	Brain Anterior Caudate	brain
25	chr14:33070200-33071000	Enhancers	Colon Smooth Muscle	Colon
26	chr14:33070200-33072400	Enhancers	NHDF-Ad	bronchial
27	chr14:33070200-33072800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr14:33070400-33070800	Weak transcription	HSMMtube	muscle
29	chr14:33070400-33071800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr14:33070400-33071800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
31	chr14:33070400-33072400	Weak transcription	Brain Germinal Matrix	brain
32	chr14:33070400-33072600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr14:33070600-33071200	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr14:33070600-33072000	Enhancers	Stomach Smooth Muscle	stomach

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