Variant report

Variant	rs6571541
Chromosome Location	chr14:33071303-33071304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10138218	0.93[ASN][1000 genomes]
rs10735738	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11156754	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626762	0.82[ASN][1000 genomes]
rs12717222	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17099309	0.86[ASN][1000 genomes]
rs17099320	0.86[ASN][1000 genomes]
rs17099324	0.86[ASN][1000 genomes]
rs17099326	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs1956212	0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs1956218	0.87[AMR][1000 genomes]
rs1956219	0.93[ASN][1000 genomes]
rs3784203	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4981992	0.88[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981993	1.00[ASN][1000 genomes]
rs61981363	0.89[ASN][1000 genomes]
rs61983021	0.86[ASN][1000 genomes]
rs6571540	0.88[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7146517	0.96[ASN][1000 genomes]
rs7154753	0.96[ASN][1000 genomes]
rs7156763	0.81[AMR][1000 genomes]
rs7157328	0.93[ASN][1000 genomes]
rs7157533	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7157744	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7160156	1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs73255099	0.89[ASN][1000 genomes]
rs8017249	0.82[ASN][1000 genomes]
rs979494	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33057800-33078200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:33059400-33072000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:33064600-33071400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr14:33064600-33071400	Weak transcription	Brain Substantia Nigra	brain
5	chr14:33064600-33071400	Weak transcription	Left Ventricle	heart
6	chr14:33064600-33071400	Weak transcription	Right Ventricle	heart
7	chr14:33064600-33074600	Weak transcription	Psoas Muscle	Psoas
8	chr14:33064600-33075600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr14:33064800-33071600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr14:33064800-33079600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr14:33067400-33077800	Weak transcription	HSMM	muscle
12	chr14:33067800-33071400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:33068200-33071600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr14:33068600-33072000	Weak transcription	Brain Angular Gyrus	brain
15	chr14:33069800-33071800	Strong transcription	Skeletal Muscle Male	skeletal muscle
16	chr14:33069800-33072400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr14:33069800-33080000	Weak transcription	Fetal Brain Female	brain
18	chr14:33070200-33072400	Enhancers	NHDF-Ad	bronchial
19	chr14:33070200-33072800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:33070400-33071800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:33070400-33071800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
22	chr14:33070400-33072400	Weak transcription	Brain Germinal Matrix	brain
23	chr14:33070400-33072600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr14:33070600-33072000	Enhancers	Stomach Smooth Muscle	stomach
25	chr14:33070800-33071400	Genic enhancers	Brain Anterior Caudate	brain
26	chr14:33070800-33071400	Strong transcription	HSMMtube	muscle
27	chr14:33070800-33072400	Enhancers	Fetal Stomach	stomach
28	chr14:33071000-33071400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:33071000-33071600	Enhancers	Fetal Heart	heart
30	chr14:33071000-33071800	Genic enhancers	Fetal Muscle Leg	muscle
31	chr14:33071000-33076400	Weak transcription	Colon Smooth Muscle	Colon
32	chr14:33071200-33071600	Enhancers	NHLF	lung
33	chr14:33071200-33072000	Strong transcription	Aorta	Aorta
34	chr14:33071200-33072400	Enhancers	Brain Hippocampus Middle	brain
35	chr14:33071200-33076400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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