Variant report

Variant	rs6573007
Chromosome Location	chr14:55625938-55625939
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs1009977	0.89[CEU][hapmap];0.94[EUR][1000 genomes]
rs1009978	0.92[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10131926	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10134339	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs10134800	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10137409	0.91[EUR][1000 genomes]
rs10140801	0.81[CEU][hapmap];0.87[CHB][hapmap]
rs10140857	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs10140869	0.85[CEU][hapmap]
rs10141552	0.88[CEU][hapmap]
rs10144418	0.85[CEU][hapmap]
rs10147667	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs10149435	0.91[EUR][1000 genomes]
rs10150699	0.83[AMR][1000 genomes]
rs10150760	0.88[CEU][hapmap]
rs10438127	0.91[EUR][1000 genomes]
rs1045002	0.89[CEU][hapmap]
rs10467798	0.89[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1047556	0.91[EUR][1000 genomes]
rs1109170	0.92[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs11621351	0.91[EUR][1000 genomes]
rs11622740	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs11625001	0.92[CEU][hapmap]
rs11625968	0.92[CEU][hapmap];0.85[JPT][hapmap]
rs11628437	0.92[CEU][hapmap]
rs11851169	0.92[CEU][hapmap]
rs13379169	0.81[AMR][1000 genomes]
rs15870	0.91[EUR][1000 genomes]
rs17128183	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17674463	0.89[CEU][hapmap]
rs17740741	0.85[CEU][hapmap]
rs17741542	0.92[CEU][hapmap]
rs17741831	0.89[CEU][hapmap]
rs17832359	0.91[EUR][1000 genomes]
rs1815316	0.91[EUR][1000 genomes]
rs1952087	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2075601	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2075602	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2075603	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs2094102	0.94[EUR][1000 genomes]
rs2147964	1.00[YRI][hapmap]
rs2147972	0.91[EUR][1000 genomes]
rs2274273	0.89[CEU][hapmap]
rs2340921	1.00[YRI][hapmap]
rs2340931	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2341621	0.89[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2341622	0.85[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs28429419	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3742569	0.88[CEU][hapmap]
rs3818451	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3825613	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs4644	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs4652	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56660630	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57970196	0.91[EUR][1000 genomes]
rs60972460	0.86[EUR][1000 genomes]
rs61508494	0.94[EUR][1000 genomes]
rs6573005	0.94[EUR][1000 genomes]
rs6573006	0.94[EUR][1000 genomes]
rs6573009	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6573010	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6573013	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs6573014	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs6573017	0.93[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap]
rs66871576	0.91[EUR][1000 genomes]
rs67098772	0.91[EUR][1000 genomes]
rs67756714	0.91[EUR][1000 genomes]
rs67805055	0.91[EUR][1000 genomes]
rs7140872	0.91[EUR][1000 genomes]
rs7142704	0.92[EUR][1000 genomes]
rs7142857	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7144292	0.86[AMR][1000 genomes]
rs7144737	0.88[CEU][hapmap]
rs7146752	0.81[AMR][1000 genomes]
rs7147106	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7153110	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs7154889	0.93[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs7158768	0.92[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs7159144	0.89[CEU][hapmap];0.83[JPT][hapmap]
rs7159808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7160110	0.89[CEU][hapmap];0.94[EUR][1000 genomes]
rs7160523	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72718804	0.89[EUR][1000 genomes]
rs7493394	0.91[EUR][1000 genomes]
rs8004787	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8006525	0.89[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap]
rs8007614	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs8007620	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs8007944	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8009670	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8011834	0.94[EUR][1000 genomes]
rs8013027	0.93[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.93[EUR][1000 genomes]
rs8018110	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8019978	1.00[YRI][hapmap]
rs8021583	0.93[CEU][hapmap]
rs8023197	0.93[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap]
rs9919926	0.82[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6573007	RP11-665C16.6	cis	Muscle Skeletal	GTEx

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55598600-55656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55604000-55636400	Strong transcription	Fetal Thymus	thymus
3	chr14:55604600-55627800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:55605000-55627600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:55605200-55656000	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr14:55605400-55657000	Weak transcription	Fetal Kidney	kidney
7	chr14:55606400-55626600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr14:55606600-55656000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:55607000-55656000	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:55607200-55652200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr14:55607600-55651800	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr14:55607600-55655200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:55610600-55651600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr14:55610600-55655400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr14:55610600-55655600	Strong transcription	Dnd41	blood
16	chr14:55610800-55656000	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr14:55611000-55656000	Weak transcription	Fetal Heart	heart
18	chr14:55611200-55643400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr14:55611400-55630200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr14:55611600-55628400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr14:55611600-55630000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr14:55611600-55656600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr14:55612400-55637400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr14:55613400-55626200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr14:55613400-55639200	Weak transcription	Fetal Intestine Small	intestine
26	chr14:55613400-55657800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr14:55614200-55633600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr14:55614800-55630400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr14:55615200-55627600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr14:55617000-55630200	Weak transcription	Osteobl	bone
31	chr14:55617800-55626800	Strong transcription	H9 Cell Line	embryonic stem cell
32	chr14:55619200-55631200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr14:55619200-55646800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr14:55619400-55634000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr14:55619600-55630800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr14:55619600-55643800	Weak transcription	NHDF-Ad	bronchial
37	chr14:55619800-55647400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr14:55621000-55633200	Weak transcription	Fetal Stomach	stomach
39	chr14:55621400-55643800	Weak transcription	NH-A	brain
40	chr14:55621600-55627400	Weak transcription	A549	lung
41	chr14:55621600-55630200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr14:55621600-55630200	Weak transcription	Fetal Muscle Trunk	muscle
43	chr14:55621600-55634400	Weak transcription	K562	blood
44	chr14:55621600-55634600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr14:55621800-55630200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr14:55621800-55630200	Weak transcription	Fetal Lung	lung
47	chr14:55621800-55632000	Weak transcription	NHLF	lung
48	chr14:55621800-55646200	Weak transcription	NHEK	skin
49	chr14:55622600-55649000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr14:55622800-55626600	Strong transcription	ES-I3 Cell Line	embryonic stem cell

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