Variant report

Variant	rs6573013
Chromosome Location	chr14:55735873-55735874
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 149 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:149)

rs_ID	r²[population]
rs1009977	0.90[TSI][hapmap]
rs1009978	0.84[CEU][hapmap]
rs10129505	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs10131562	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs10131730	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs10131913	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10131926	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10134317	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs10134339	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs10134800	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10136596	0.92[CEU][hapmap];0.81[CHB][hapmap]
rs10137307	0.92[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap]
rs10138446	0.89[ASW][hapmap];0.86[MEX][hapmap]
rs10139083	0.92[EUR][1000 genomes]
rs10139337	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10139678	0.91[EUR][1000 genomes]
rs10140801	0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10140869	0.89[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs10141396	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs10141483	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10141552	0.92[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[TSI][hapmap];0.95[EUR][1000 genomes]
rs10142448	0.92[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.90[TSI][hapmap]
rs10142547	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10142823	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10144345	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10144418	0.89[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap]
rs10145203	0.90[EUR][1000 genomes]
rs10146637	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs10147667	0.81[CEU][hapmap]
rs10149420	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10150699	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10150760	0.92[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.90[TSI][hapmap]
rs1045002	0.92[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap]
rs10467798	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1109170	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11158034	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs11547116	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11625001	0.96[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes]
rs11625423	0.89[EUR][1000 genomes]
rs11625968	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11628437	0.96[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs11851169	0.96[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap]
rs12050099	0.90[EUR][1000 genomes]
rs13379169	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1538257	0.89[ASW][hapmap];0.86[MEX][hapmap]
rs1572611	0.81[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap]
rs17128440	0.82[EUR][1000 genomes]
rs17674463	0.92[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs17740741	0.89[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs17741542	0.96[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[TSI][hapmap]
rs17741831	0.92[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap]
rs1815581	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1952087	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1972221	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs2009291	1.00[ASW][hapmap];0.92[CEU][hapmap];0.81[CHB][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2026633	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs2075601	0.89[ASW][hapmap];0.89[CEU][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs2075602	0.89[ASW][hapmap];0.88[CEU][hapmap];0.83[GIH][hapmap];0.88[LWK][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs2147964	1.00[YRI][hapmap]
rs2274273	0.85[TSI][hapmap]
rs2340921	1.00[YRI][hapmap]
rs2340931	0.81[CEU][hapmap]
rs2341621	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2341622	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28504448	0.81[EUR][1000 genomes]
rs28568813	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28631821	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28716725	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2880103	0.86[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs3742569	0.92[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.90[TSI][hapmap]
rs3783650	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3783651	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs3783652	0.96[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs3818451	0.85[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs3825613	0.82[TSI][hapmap]
rs3825616	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4366639	0.89[EUR][1000 genomes]
rs4496026	0.89[EUR][1000 genomes]
rs4519260	0.87[AMR][1000 genomes]
rs4597235	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4644	0.82[TSI][hapmap]
rs4652	0.80[ASW][hapmap];0.85[CEU][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs56166765	0.84[ASN][1000 genomes]
rs56949365	0.89[EUR][1000 genomes]
rs58260073	0.93[EUR][1000 genomes]
rs59629906	0.92[EUR][1000 genomes]
rs59871474	0.92[EUR][1000 genomes]
rs60248556	0.94[EUR][1000 genomes]
rs61210954	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6573007	0.82[AMR][1000 genomes]
rs6573009	0.87[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6573010	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6573012	0.89[AMR][1000 genomes]
rs6573014	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573017	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6573020	1.00[CEU][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs66486619	0.81[EUR][1000 genomes]
rs66696758	0.93[EUR][1000 genomes]
rs67514154	0.94[EUR][1000 genomes]
rs68046603	0.91[EUR][1000 genomes]
rs7142857	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7144292	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7144737	0.92[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.90[TSI][hapmap]
rs7146748	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7146752	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147106	0.83[AMR][1000 genomes]
rs7147247	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs7148171	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7150763	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs7151581	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs7152390	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs7153110	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.82[EUR][1000 genomes]
rs7153612	0.90[EUR][1000 genomes]
rs7153645	0.93[EUR][1000 genomes]
rs7154889	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7155954	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs7158768	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7158791	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs7158861	0.82[EUR][1000 genomes]
rs7159144	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7159808	0.89[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs7159824	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs7160110	0.90[TSI][hapmap]
rs7160523	0.89[ASW][hapmap];0.89[CEU][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs72715769	0.94[EUR][1000 genomes]
rs8004787	0.92[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs8005450	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs8006525	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs8007614	0.89[CEU][hapmap]
rs8007620	0.89[CEU][hapmap]
rs8009670	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs8011288	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8013027	0.81[CEU][hapmap]
rs8013713	0.96[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.90[TSI][hapmap]
rs8014477	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs8014540	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs8015211	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs8018110	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs8019978	1.00[YRI][hapmap]
rs8021583	0.96[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes]
rs8022041	0.81[EUR][1000 genomes]
rs8022225	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8023197	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs9323284	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9323285	0.86[JPT][hapmap]
rs943590	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs946059	1.00[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9919926	0.85[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap]
rs9919932	0.81[CHB][hapmap];0.82[JPT][hapmap]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs6573013	RP11-665C16.6	cis	Muscle Skeletal	GTEx
rs6573013	PSMA3	cis	parietal	SCAN
rs6573013	FBXO34	cis	multi-tissue	Pritchard
rs6573013	WDHD1	cis	parietal	SCAN
rs6573013	ATG14	cis	parietal	SCAN
rs6573013	FBXO34	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55730600-55737400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr14:55732600-55737400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr14:55734000-55737600	Weak transcription	Lung	lung
4	chr14:55734200-55737200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr14:55734400-55737400	Weak transcription	Fetal Lung	lung
6	chr14:55734600-55737200	Weak transcription	K562	blood
7	chr14:55734800-55737400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr14:55734800-55737600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr14:55734800-55737800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:55735000-55737200	Weak transcription	Osteobl	bone
11	chr14:55735000-55737400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr14:55735000-55737600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr14:55735000-55737600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:55735000-55737600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr14:55735000-55737800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:55735200-55737200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr14:55735200-55737400	Weak transcription	Fetal Heart	heart
18	chr14:55735200-55737600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr14:55735200-55737600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr14:55735200-55737600	Weak transcription	Aorta	Aorta
21	chr14:55735200-55737600	Weak transcription	HSMMtube	muscle
22	chr14:55735200-55737800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr14:55735400-55737600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr14:55735400-55737600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr14:55735800-55737400	Weak transcription	Fetal Kidney	kidney

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