Variant report

Variant	rs6574036
Chromosome Location	chr14:72439168-72439169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10047915	0.83[YRI][hapmap]
rs1009018	0.86[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10134070	0.83[YRI][hapmap]
rs10134883	0.82[YRI][hapmap]
rs10146194	0.83[YRI][hapmap]
rs10873248	0.84[EUR][1000 genomes]
rs17768054	1.00[ASN][1000 genomes]
rs1978226	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs2109268	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2190871	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs2190872	0.81[CEU][hapmap]
rs2190874	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2215133	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332706	0.81[CEU][hapmap]
rs2877772	1.00[EUR][1000 genomes]
rs2877773	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2877775	0.83[YRI][hapmap]
rs36319	0.93[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36320	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36321	0.86[EUR][1000 genomes]
rs36322	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36323	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36324	0.86[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36325	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36328	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36329	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36330	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36331	0.93[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36333	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36334	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36337	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36338	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36339	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36342	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36343	0.96[EUR][1000 genomes]
rs36346	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36347	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36348	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36349	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36352	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36353	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36354	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36355	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36357	0.96[EUR][1000 genomes]
rs36358	0.91[EUR][1000 genomes]
rs36359	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36362	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36364	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36365	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36367	1.00[ASN][1000 genomes]
rs36371	1.00[ASN][1000 genomes]
rs36374	1.00[ASN][1000 genomes]
rs36400	1.00[ASN][1000 genomes]
rs36402	1.00[ASN][1000 genomes]
rs36407	1.00[ASN][1000 genomes]
rs36413	1.00[ASN][1000 genomes]
rs36414	1.00[ASN][1000 genomes]
rs4243639	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4598834	0.93[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899406	0.93[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899408	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902959	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902962	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902967	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs4902968	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs4902969	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs4902970	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs4902972	0.93[CEU][hapmap]
rs61996396	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161413	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs722975	0.93[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728494	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728495	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728498	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs758236	1.00[CEU][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004427	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs8011972	0.93[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014500	0.86[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs917392	0.86[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9806063	0.88[EUR][1000 genomes]
rs991890	0.93[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6574036	RGS6	cis	Thyroid	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72436200-72442000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:72438000-72441600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:72438000-72442000	Weak transcription	Left Ventricle	heart
4	chr14:72438400-72439200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:72438600-72439600	Weak transcription	Fetal Heart	heart

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