Variant report

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10457930	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12208565	1.00[ASN][1000 genomes]
rs1222375	1.00[ASN][1000 genomes]
rs1415946	0.86[GIH][hapmap]
rs2254178	1.00[ASN][1000 genomes]
rs2399557	1.00[ASN][1000 genomes]
rs2579929	1.00[ASN][1000 genomes]
rs2764271	1.00[ASN][1000 genomes]
rs2787573	1.00[ASN][1000 genomes]
rs2852497	1.00[ASN][1000 genomes]
rs2852503	0.92[GIH][hapmap];0.84[MEX][hapmap]
rs2852505	1.00[ASN][1000 genomes]
rs2852507	0.86[GIH][hapmap]
rs2852508	0.86[GIH][hapmap]
rs2852509	0.86[GIH][hapmap]
rs2852510	1.00[ASN][1000 genomes]
rs2852511	0.86[GIH][hapmap]
rs2852512	0.86[GIH][hapmap]
rs2852513	1.00[ASN][1000 genomes]
rs2852514	1.00[ASN][1000 genomes]
rs4240592	1.00[ASN][1000 genomes]
rs4429955	1.00[ASN][1000 genomes]
rs4455678	1.00[ASN][1000 genomes]
rs4615398	1.00[ASN][1000 genomes]
rs496596	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs503387	1.00[ASN][1000 genomes]
rs570556	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs626262	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632956	1.00[ASN][1000 genomes]
rs643101	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659271	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs661064	1.00[ASN][1000 genomes]
rs687497	1.00[ASN][1000 genomes]
rs697438	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72958632	1.00[ASN][1000 genomes]
rs7740295	1.00[ASN][1000 genomes]
rs9498519	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101729800-101740800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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