Variant report

Variant	rs6587655
Chromosome Location	chr1:152220779-152220780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10494273	1.00[MEX][hapmap]
rs10749672	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10788829	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10888469	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10888474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11204940	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11204950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12062763	1.00[MEX][hapmap]
rs12079093	1.00[MEX][hapmap]
rs1466758	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1532400	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16833867	1.00[MEX][hapmap]
rs16833974	1.00[MEX][hapmap]
rs1858481	0.83[ASW][hapmap]
rs2036101	1.00[ASW][hapmap];0.91[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3120648	0.87[AFR][1000 genomes]
rs3120657	0.81[AFR][1000 genomes]
rs3120658	0.81[AFR][1000 genomes]
rs3120669	1.00[MEX][hapmap]
rs3126057	0.85[AFR][1000 genomes]
rs3126064	0.85[AFR][1000 genomes]
rs3126065	0.88[ASW][hapmap]
rs3126087	0.83[ASW][hapmap]
rs3134871	0.83[ASW][hapmap]
rs3134872	0.88[ASW][hapmap]
rs4333850	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4548447	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4845735	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs4845738	0.83[AMR][1000 genomes]
rs6587648	0.83[AMR][1000 genomes]
rs6587649	0.83[AMR][1000 genomes]
rs6587653	0.83[AMR][1000 genomes]
rs7520132	0.83[AMR][1000 genomes]
rs7523354	1.00[MEX][hapmap];0.81[MKK][hapmap];0.81[YRI][hapmap];0.93[AFR][1000 genomes]
rs7533656	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7534986	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7550091	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv547853	chr1:152008671-152236760	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv947506	chr1:152203216-152223222	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv159214	chr1:152213931-152223706	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152218600-152224600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:152218800-152223200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:152219400-152230200	Weak transcription	Ovary	ovary
4	chr1:152219800-152224400	Enhancers	NHEK	skin
5	chr1:152220000-152220800	Enhancers	HMEC	breast
6	chr1:152220000-152221000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:152220000-152221600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:152220600-152224000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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