Variant report

Variant	rs6588204
Chromosome Location	chr1:66991008-66991009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10889624	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10889625	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11208903	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12143964	0.91[EUR][1000 genomes]
rs1338184	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1338194	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1338200	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1415974	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1415984	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1547737	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1856315	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1947083	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2121051	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2859914	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4142763	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4655494	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6588203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6691033	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7354930	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7354983	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355221	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7540195	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7543607	0.91[EUR][1000 genomes]
rs967322	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs967325	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs984409	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs994396	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:66987800-66992600	Weak transcription	HUVEC	blood vessel
2	chr1:66988000-66993400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:66988200-66993000	Weak transcription	NHDF-Ad	bronchial
4	chr1:66988400-66991600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:66988400-66998200	Weak transcription	Osteobl	bone
6	chr1:66989800-66991200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:66989800-66991600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:66990000-66991600	Weak transcription	Fetal Heart	heart
9	chr1:66990600-66992000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:66990800-66991200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:66990800-66991400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:66990800-66994800	Enhancers	NHLF	lung
13	chr1:66991000-66992000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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