Variant report

Variant	rs6591420
Chromosome Location	chr11:57064981-57064982
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:57062045..57064988-chr11:57091801..57094620,2	K562	blood:

Variant related genes	Relation type
ENSG00000254662	Chromatin interaction
ENSG00000149115	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1939488	0.93[AFR][1000 genomes]
rs6591419	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57052400-57078200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:57056800-57065400	Weak transcription	Fetal Heart	heart
3	chr11:57057000-57065200	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:57057000-57066400	Weak transcription	Colonic Mucosa	Colon
5	chr11:57057000-57066800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:57057200-57065000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:57057200-57065200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:57057200-57066400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:57057200-57066800	Weak transcription	Brain Substantia Nigra	brain
10	chr11:57057400-57065800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:57057400-57066600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:57057800-57065600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:57057800-57066400	Weak transcription	Fetal Kidney	kidney
14	chr11:57058200-57066600	Weak transcription	HUVEC	blood vessel
15	chr11:57058400-57065000	Weak transcription	NHLF	lung
16	chr11:57059000-57065200	Weak transcription	Fetal Brain Female	brain
17	chr11:57060800-57066600	Weak transcription	K562	blood
18	chr11:57061000-57066600	Weak transcription	Fetal Thymus	thymus
19	chr11:57061200-57065000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:57061200-57066400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:57061200-57066800	Weak transcription	HepG2	liver
22	chr11:57061400-57065200	Weak transcription	Fetal Intestine Large	intestine
23	chr11:57062000-57065000	Weak transcription	Brain Anterior Caudate	brain
24	chr11:57062200-57065200	Weak transcription	Lung	lung
25	chr11:57062200-57066400	Weak transcription	Psoas Muscle	Psoas
26	chr11:57062200-57066600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:57062400-57065000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:57062400-57065000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr11:57062400-57065200	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr11:57062400-57066600	Weak transcription	Fetal Brain Male	brain
31	chr11:57062600-57065000	Weak transcription	Aorta	Aorta
32	chr11:57062600-57065000	Weak transcription	Brain Germinal Matrix	brain
33	chr11:57062600-57065000	Weak transcription	Pancreas	Pancrea
34	chr11:57062600-57065200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:57062600-57065200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr11:57062600-57065200	Weak transcription	Gastric	stomach
37	chr11:57062600-57065200	Weak transcription	Right Atrium	heart
38	chr11:57062600-57065200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr11:57062600-57065400	Weak transcription	Fetal Lung	lung
40	chr11:57062600-57065800	Weak transcription	Brain Angular Gyrus	brain
41	chr11:57062600-57066000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr11:57062600-57066000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:57062600-57066200	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr11:57062600-57066400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr11:57062600-57066400	Weak transcription	Small Intestine	intestine
46	chr11:57062800-57065000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr11:57062800-57065000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:57062800-57065600	Weak transcription	NH-A	brain
49	chr11:57062800-57066200	Weak transcription	Duodenum Mucosa	Duodenum
50	chr11:57062800-57066400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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