Variant report

Variant	rs6592688
Chromosome Location	chr11:76676396-76676397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10793215	0.83[AMR][1000 genomes]
rs10793216	0.82[ASN][1000 genomes]
rs10793218	0.80[EUR][1000 genomes]
rs10899336	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11237029	0.84[ASN][1000 genomes]
rs11237031	0.81[AMR][1000 genomes]
rs11237045	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11533271	0.80[ASN][1000 genomes]
rs6592684	0.83[AMR][1000 genomes]
rs6592685	0.83[AMR][1000 genomes]
rs7129147	0.86[AMR][1000 genomes]
rs7929204	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7929837	0.83[AMR][1000 genomes]
rs7942574	0.83[AMR][1000 genomes]
rs9795148	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519700	chr11:76637651-76709407	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1042924	chr11:76659477-76709407	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1040833	chr11:76667160-76709407	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv396	chr11:76670116-76702745	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv498761	chr11:76672826-76677823	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76631400-76688400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:76645800-76683800	Weak transcription	Esophagus	oesophagus
3	chr11:76646600-76688000	Weak transcription	HMEC	breast
4	chr11:76650600-76681200	Weak transcription	Brain Substantia Nigra	brain
5	chr11:76655800-76681800	Weak transcription	Primary B cells from cord blood	blood
6	chr11:76656200-76677000	Weak transcription	Brain Anterior Caudate	brain
7	chr11:76657000-76676600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr11:76657200-76688400	Weak transcription	Gastric	stomach
9	chr11:76660000-76710800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr11:76665800-76688400	Weak transcription	Right Ventricle	heart
11	chr11:76666800-76677600	Weak transcription	Hela-S3	cervix
12	chr11:76666800-76695400	Weak transcription	NHEK	skin
13	chr11:76672200-76676800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:76672200-76677200	Weak transcription	Ovary	ovary
15	chr11:76672200-76682600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:76672200-76697800	Weak transcription	Left Ventricle	heart
17	chr11:76672400-76696000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:76673000-76689600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:76673800-76690400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:76674000-76688600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:76674200-76676600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:76674200-76683800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:76674400-76696000	Weak transcription	Small Intestine	intestine
24	chr11:76675000-76677000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:76675000-76681400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr11:76675000-76682000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:76675000-76683800	Weak transcription	Placenta	Placenta
28	chr11:76675000-76688600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:76675000-76689800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr11:76675000-76691600	Weak transcription	Fetal Lung	lung
31	chr11:76675000-76721800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr11:76675000-76725600	Weak transcription	A549	lung
33	chr11:76675000-76729600	Weak transcription	Brain Angular Gyrus	brain
34	chr11:76675200-76676800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr11:76675200-76677200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr11:76675200-76677200	Weak transcription	Adipose Nuclei	Adipose
37	chr11:76675200-76677400	Weak transcription	Brain Hippocampus Middle	brain
38	chr11:76675200-76677600	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr11:76675200-76678600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:76675200-76681800	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr11:76675200-76682600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr11:76675200-76682800	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr11:76675200-76684000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:76675200-76688000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:76675200-76688000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:76675200-76688200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:76675400-76682800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:76675400-76688600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr11:76675400-76688800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr11:76675400-76689000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links