Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10249958	0.82[AMR][1000 genomes]
rs10500102	0.83[ASN][1000 genomes]
rs12531213	0.90[ASN][1000 genomes]
rs12535063	0.82[ASN][1000 genomes]
rs1357971	0.94[ASN][1000 genomes]
rs1568882	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28402853	0.82[ASN][1000 genomes]
rs2929321	0.84[EUR][1000 genomes]
rs2929322	0.84[EUR][1000 genomes]
rs585988	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs590516	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs598102	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60486828	0.82[ASN][1000 genomes]
rs625037	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs627823	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6466995	0.82[ASN][1000 genomes]
rs650653	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs651988	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs663056	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs664062	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs669273	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs670910	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs671359	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6954295	0.82[ASN][1000 genomes]
rs715937	0.82[ASN][1000 genomes]
rs7783242	0.82[ASN][1000 genomes]
rs7794583	0.94[ASN][1000 genomes]
rs7800299	0.82[ASN][1000 genomes]
rs792617	0.82[ASN][1000 genomes]
rs792637	0.82[ASN][1000 genomes]
rs792749	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	esv3394090	chr7:124602150-124900799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv464708	chr7:124703756-124805279	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv608344	chr7:124703756-124805279	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv831119	chr7:124714009-124890119	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124778000-124786800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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