Variant report

Variant	rs6592696
Chromosome Location	chr11:76734845-76734846
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76728251..76730918-chr11:76733104..76735734,2	K562	blood:
2	chr11:76734288..76736096-chr11:76745651..76747532,2	MCF-7	breast:
3	chr11:76726745..76728843-chr11:76732753..76735602,2	K562	blood:
4	chr11:76730817..76732917-chr11:76734478..76737111,3	MCF-7	breast:
5	chr11:76731422..76735171-chr11:76748297..76752199,4	MCF-7	breast:
6	chr11:76734306..76734919-chr7:142426926..142427446,2	MCF-7	breast:
7	chr11:76729418..76731930-chr11:76733104..76735271,2	K562	blood:

Variant related genes	Relation type
ENSG00000198488	Chromatin interaction
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1062170	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17135310	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17135319	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17160169	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2187498	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4341568	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4597093	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57505872	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57756929	1.00[EUR][1000 genomes]
rs58530046	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58566866	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60982520	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592673	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6592681	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6592695	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102199	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7103881	1.00[EUR][1000 genomes]
rs7104807	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105271	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7105797	1.00[EUR][1000 genomes]
rs7106009	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7106029	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7113911	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114082	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114367	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115053	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7118970	1.00[EUR][1000 genomes]
rs7119233	1.00[EUR][1000 genomes]
rs73489514	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73489576	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73489579	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73489582	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73489585	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73489594	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73491425	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73491456	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73507813	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73507817	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73507826	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73507833	1.00[EUR][1000 genomes]
rs7924330	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7932066	1.00[EUR][1000 genomes]
rs7932449	1.00[EUR][1000 genomes]
rs7933347	1.00[EUR][1000 genomes]
rs7943089	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943364	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943396	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7945781	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9704887	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9919623	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76683000-76736400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:76689600-76737000	Weak transcription	Pancreas	Pancrea
3	chr11:76690000-76735800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:76690200-76736800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr11:76694000-76738600	Weak transcription	HSMMtube	muscle
6	chr11:76696200-76738000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:76701200-76738400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:76702600-76736000	Weak transcription	Brain Substantia Nigra	brain
9	chr11:76705600-76735600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:76716400-76739800	Weak transcription	Colonic Mucosa	Colon
11	chr11:76720000-76738000	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:76720400-76735600	Weak transcription	Primary B cells from cord blood	blood
13	chr11:76720400-76738000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:76720800-76736400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:76720800-76737200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:76722600-76736600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:76722600-76736600	Weak transcription	Spleen	Spleen
18	chr11:76722600-76740400	Weak transcription	Lung	lung
19	chr11:76722600-76741800	Weak transcription	Aorta	Aorta
20	chr11:76722600-76741800	Weak transcription	Gastric	stomach
21	chr11:76724000-76735000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:76726800-76735200	Weak transcription	NHDF-Ad	bronchial
23	chr11:76727200-76735400	Weak transcription	Fetal Intestine Small	intestine
24	chr11:76727200-76736600	Weak transcription	Fetal Intestine Large	intestine
25	chr11:76727200-76740400	Weak transcription	Esophagus	oesophagus
26	chr11:76728600-76735600	Weak transcription	GM12878-XiMat	blood
27	chr11:76730200-76738400	Weak transcription	Brain Hippocampus Middle	brain
28	chr11:76730200-76738600	Weak transcription	Brain Angular Gyrus	brain
29	chr11:76731400-76735400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr11:76731600-76737200	Weak transcription	HSMM	muscle
31	chr11:76731800-76737200	Weak transcription	HepG2	liver
32	chr11:76731800-76738400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:76732200-76735400	Weak transcription	K562	blood
34	chr11:76732200-76738000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:76732200-76738600	Weak transcription	NHEK	skin
36	chr11:76732200-76741400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr11:76732200-76746600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr11:76732400-76735600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr11:76732400-76736200	Weak transcription	HUVEC	blood vessel
40	chr11:76732400-76736800	Weak transcription	Placenta	Placenta
41	chr11:76732400-76737600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:76732400-76740000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr11:76732600-76738400	Weak transcription	HMEC	breast
44	chr11:76733000-76736600	Weak transcription	A549	lung
45	chr11:76733000-76737800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:76733000-76746200	Weak transcription	Hela-S3	cervix
47	chr11:76733200-76736600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr11:76733200-76736800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr11:76733200-76739200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr11:76733400-76738400	Weak transcription	Fetal Lung	lung

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