Variant report

Variant	rs6593526
Chromosome Location	chr1:76734647-76734648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10493589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696780	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9437391	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1499	chr1:76704981-76749688	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76726400-76740000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr1:76727400-76744800	Weak transcription	Aorta	Aorta
3	chr1:76731800-76736200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr1:76731800-76736600	Enhancers	Fetal Thymus	thymus
5	chr1:76732000-76737000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:76732000-76737600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr1:76732200-76736400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr1:76732200-76736400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr1:76732200-76737000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr1:76732400-76735200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:76732400-76735600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr1:76732600-76735000	Enhancers	Dnd41	blood
13	chr1:76732800-76735000	Enhancers	Fetal Kidney	kidney
14	chr1:76732800-76735800	Enhancers	Fetal Lung	lung
15	chr1:76732800-76736000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:76733000-76735400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr1:76733000-76735800	Enhancers	Primary hematopoietic stem cells	blood
18	chr1:76733000-76735800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr1:76733000-76737000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr1:76733200-76735800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr1:76733400-76735000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr1:76733400-76735600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:76733400-76735600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr1:76733600-76735600	Enhancers	Brain Hippocampus Middle	brain
25	chr1:76733800-76735000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr1:76733800-76735000	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr1:76733800-76735000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr1:76733800-76735200	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr1:76733800-76735600	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr1:76733800-76735600	Enhancers	HSMMtube	muscle
31	chr1:76733800-76735800	Enhancers	Brain Cingulate Gyrus	brain
32	chr1:76733800-76735800	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr1:76733800-76736600	Enhancers	Fetal Muscle Leg	muscle
34	chr1:76733800-76736800	Enhancers	Primary T cells fromperipheralblood	blood
35	chr1:76734000-76734800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr1:76734000-76734800	Enhancers	Right Atrium	heart
37	chr1:76734000-76735000	Enhancers	H1 Cell Line	embryonic stem cell
38	chr1:76734000-76735000	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr1:76734000-76735200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr1:76734000-76735200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:76734000-76735200	Enhancers	Fetal Heart	heart
42	chr1:76734000-76735400	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr1:76734000-76735400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr1:76734000-76735600	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr1:76734000-76735600	Enhancers	H9 Cell Line	embryonic stem cell
46	chr1:76734000-76735800	Enhancers	HSMM	muscle
47	chr1:76734000-76736200	Enhancers	Fetal Muscle Trunk	muscle
48	chr1:76734000-76736400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr1:76734000-76736600	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr1:76734000-76736600	Enhancers	Skeletal Muscle Female	skeletal muscle

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