Variant report

Variant	rs6595018
Chromosome Location	chr5:116549781-116549782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10478336	0.93[ASN][1000 genomes]
rs2132050	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34199913	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34421802	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34498712	0.86[ASN][1000 genomes]
rs4580811	1.00[JPT][hapmap]
rs6870246	0.86[AFR][1000 genomes]
rs6875387	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6891356	0.86[AFR][1000 genomes]
rs7710974	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882754	chr5:116505127-116553503	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
2	nsv1015741	chr5:116525936-116665270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116541800-116550600	Weak transcription	Stomach Mucosa	stomach
2	chr5:116543000-116559000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:116548400-116549800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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