Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11948998	0.81[ASN][1000 genomes]
rs11952820	0.81[ASN][1000 genomes]
rs11953096	0.81[ASN][1000 genomes]
rs11956636	1.00[ASN][1000 genomes]
rs11958835	0.81[ASN][1000 genomes]
rs17166428	0.81[ASN][1000 genomes]
rs327810	0.81[ASN][1000 genomes]
rs55844753	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55862038	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56898185	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57793152	1.00[EUR][1000 genomes]
rs58224759	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59181854	1.00[ASN][1000 genomes]
rs59325325	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61199566	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6866629	0.81[ASN][1000 genomes]
rs6880359	0.81[ASN][1000 genomes]
rs6893282	1.00[ASN][1000 genomes]
rs727637	1.00[ASN][1000 genomes]
rs73773578	0.83[AMR][1000 genomes]
rs73776004	1.00[ASN][1000 genomes]
rs73776005	1.00[ASN][1000 genomes]
rs73776017	1.00[ASN][1000 genomes]
rs73776026	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73776027	0.81[ASN][1000 genomes]
rs73776028	0.81[ASN][1000 genomes]
rs73776032	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7726329	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv882415	chr5:98134186-98312447	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98132600-98154000	Weak transcription	HSMM	muscle
2	chr5:98143000-98149200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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