Variant report

Variant	rs6596748
Chromosome Location	chr5:97680188-97680189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10035546	0.89[ASN][1000 genomes]
rs10036788	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10036839	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10050404	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10050543	0.89[ASN][1000 genomes]
rs10054643	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074663	1.00[AMR][1000 genomes]
rs11950953	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953877	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953894	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11954911	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11955115	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11955987	1.00[EUR][1000 genomes]
rs11959995	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs12516014	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs12516667	0.89[ASN][1000 genomes]
rs12517476	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12519087	0.89[ASN][1000 genomes]
rs12520566	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1378443	0.95[AMR][1000 genomes]
rs1378445	0.95[AMR][1000 genomes]
rs1455424	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1455425	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1455426	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1455432	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17165878	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17165943	0.89[ASN][1000 genomes]
rs28368620	0.80[AMR][1000 genomes]
rs35382921	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4702968	0.89[ASN][1000 genomes]
rs4702970	0.89[ASN][1000 genomes]
rs4703066	0.89[ASN][1000 genomes]
rs4703347	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4703354	0.89[ASN][1000 genomes]
rs59277777	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59423561	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60249733	0.89[ASN][1000 genomes]
rs60702807	0.95[AMR][1000 genomes]
rs61740530	0.96[EUR][1000 genomes]
rs62369875	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6594645	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6594647	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6596727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs6596729	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6596743	0.96[EUR][1000 genomes]
rs6862206	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6863762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs6870895	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6871138	0.92[EUR][1000 genomes]
rs6872708	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs6872831	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877032	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6882939	0.87[EUR][1000 genomes]
rs6885408	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs6885953	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6887168	0.87[EUR][1000 genomes]
rs6889222	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6890493	0.89[ASN][1000 genomes]
rs73143833	0.89[ASN][1000 genomes]
rs73159220	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159222	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159223	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159226	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159258	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7702659	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7702702	0.89[ASN][1000 genomes]
rs7714842	0.89[ASN][1000 genomes]
rs7715004	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7718848	0.87[EUR][1000 genomes]
rs7734263	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7734271	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97678200-97685000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:97678200-97685000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr5:97678200-97685000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:97678600-97685000	Weak transcription	Osteobl	bone
5	chr5:97679000-97680600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links