Variant report

Variant	rs6601437
Chromosome Location	chr8:10178537-10178538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10178281..10180046-chr8:10185118..10187450,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10086995	1.00[EUR][1000 genomes]
rs10098637	1.00[EUR][1000 genomes]
rs10101698	1.00[EUR][1000 genomes]
rs10113178	1.00[AMR][1000 genomes]
rs11784828	1.00[EUR][1000 genomes]
rs13258224	1.00[EUR][1000 genomes]
rs13280593	1.00[EUR][1000 genomes]
rs17151402	1.00[AMR][1000 genomes]
rs17151819	1.00[EUR][1000 genomes]
rs17151838	1.00[EUR][1000 genomes]
rs17151840	1.00[EUR][1000 genomes]
rs17151867	1.00[EUR][1000 genomes]
rs17151871	1.00[EUR][1000 genomes]
rs17151875	1.00[EUR][1000 genomes]
rs17151882	1.00[EUR][1000 genomes]
rs28393341	1.00[AMR][1000 genomes]
rs28399250	1.00[AMR][1000 genomes]
rs28412858	1.00[AMR][1000 genomes]
rs4840477	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4841316	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59767984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60595937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6601434	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6601436	0.83[YRI][hapmap]
rs6601438	0.90[YRI][hapmap]
rs6988687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6997398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6997776	1.00[AMR][1000 genomes]
rs7009948	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7012830	1.00[AMR][1000 genomes]
rs73534551	1.00[EUR][1000 genomes]
rs73534552	1.00[EUR][1000 genomes]
rs73534561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7830402	1.00[EUR][1000 genomes]
rs7831992	1.00[AMR][1000 genomes]
rs7838059	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1028650	chr8:10101815-10178537	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv610264	chr8:10158428-10181176	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10151400-10178800	Weak transcription	Spleen	Spleen
2	chr8:10167200-10178800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:10168200-10178800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:10168400-10188600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr8:10169000-10183200	Weak transcription	Brain Angular Gyrus	brain
6	chr8:10169000-10183600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr8:10170800-10178800	Weak transcription	Pancreas	Pancrea
8	chr8:10170800-10178800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr8:10173200-10182200	Weak transcription	Fetal Brain Male	brain
10	chr8:10175200-10178800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr8:10175600-10183200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr8:10175800-10178800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:10175800-10178800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr8:10176200-10178800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr8:10176200-10178800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr8:10176600-10178800	Strong transcription	Liver	Liver
17	chr8:10176600-10191200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:10176800-10178800	Weak transcription	Fetal Intestine Large	intestine
19	chr8:10176800-10179600	Weak transcription	Colonic Mucosa	Colon
20	chr8:10177200-10178800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr8:10177200-10179800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr8:10177400-10178800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr8:10177400-10179000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr8:10177400-10179200	ZNF genes & repeats	Lung	lung
25	chr8:10177600-10178600	Strong transcription	Primary B cells from cord blood	blood
26	chr8:10177600-10178800	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr8:10177600-10178800	Weak transcription	Gastric	stomach
28	chr8:10177800-10178800	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr8:10177800-10179400	ZNF genes & repeats	Fetal Intestine Small	intestine
30	chr8:10177800-10179600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
31	chr8:10177800-10179600	ZNF genes & repeats	Primary T cells from cord blood	blood
32	chr8:10177800-10179600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr8:10178000-10178800	Weak transcription	Adipose Nuclei	Adipose
34	chr8:10178000-10179400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
35	chr8:10178000-10179600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr8:10178000-10179600	ZNF genes & repeats	Fetal Brain Female	brain
37	chr8:10178200-10179400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
38	chr8:10178200-10179400	ZNF genes & repeats	Brain Hippocampus Middle	brain
39	chr8:10178200-10179400	ZNF genes & repeats	Brain Substantia Nigra	brain
40	chr8:10178200-10179400	ZNF genes & repeats	Fetal Stomach	stomach
41	chr8:10178200-10179400	ZNF genes & repeats	Left Ventricle	heart
42	chr8:10178200-10179600	ZNF genes & repeats	Brain Anterior Caudate	brain
43	chr8:10178200-10180200	ZNF genes & repeats	Brain Germinal Matrix	brain
44	chr8:10178400-10178800	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr8:10178400-10178800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
46	chr8:10178400-10179400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
47	chr8:10178400-10179600	ZNF genes & repeats	Primary B cells from peripheral blood	blood

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