Variant report

Variant	rs6601446
Chromosome Location	chr8:10219595-10219596
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10107920	0.81[EUR][1000 genomes]
rs11991747	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12548803	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13258495	0.81[EUR][1000 genomes]
rs17151885	0.81[EUR][1000 genomes]
rs17151901	0.81[EUR][1000 genomes]
rs6601448	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536280	0.81[EUR][1000 genomes]
rs73662822	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7818294	0.81[EUR][1000 genomes]
rs7836668	0.81[EUR][1000 genomes]
rs9329220	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv527326	chr8:10199548-10320019	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1018940	chr8:10200886-10220973	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10192600-10282400	Weak transcription	Gastric	stomach
2	chr8:10193000-10235000	Weak transcription	Pancreas	Pancrea
3	chr8:10193600-10220400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr8:10196800-10228000	Weak transcription	Liver	Liver
5	chr8:10201800-10221800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:10204000-10219800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr8:10204400-10221800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:10206200-10222800	Weak transcription	Aorta	Aorta
9	chr8:10208800-10220400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:10209400-10220600	Weak transcription	Brain Angular Gyrus	brain
11	chr8:10210600-10220200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr8:10211200-10220000	Weak transcription	Right Atrium	heart
13	chr8:10216200-10220600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:10217400-10219600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:10217400-10220600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr8:10217400-10220600	Weak transcription	Right Ventricle	heart
17	chr8:10217600-10220000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr8:10217600-10226400	Enhancers	Fetal Brain Male	brain
19	chr8:10217800-10220000	Weak transcription	Lung	lung
20	chr8:10217800-10220200	Weak transcription	Adipose Nuclei	Adipose
21	chr8:10217800-10220600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr8:10218200-10220800	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr8:10218400-10219600	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr8:10218400-10220200	Weak transcription	Esophagus	oesophagus
25	chr8:10218400-10221000	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr8:10218600-10222800	Weak transcription	Brain Anterior Caudate	brain
27	chr8:10218800-10219600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr8:10218800-10219800	Weak transcription	Fetal Brain Female	brain
29	chr8:10218800-10220000	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr8:10218800-10220000	Weak transcription	Fetal Thymus	thymus
31	chr8:10218800-10220200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr8:10218800-10222000	Weak transcription	NHDF-Ad	bronchial
33	chr8:10218800-10223200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr8:10218800-10223400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr8:10219000-10220000	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr8:10219000-10220200	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr8:10219000-10220200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr8:10219200-10219600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr8:10219200-10220000	Weak transcription	Left Ventricle	heart
40	chr8:10219200-10220200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr8:10219200-10220400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr8:10219200-10220600	Weak transcription	HMEC	breast
43	chr8:10219400-10219800	Flanking Active TSS	Primary T cells from cord blood	blood
44	chr8:10219400-10219800	Weak transcription	NHEK	skin
45	chr8:10219400-10221000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr8:10219400-10222000	Enhancers	Spleen	Spleen
47	chr8:10219400-10224600	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links