Variant report

Variant	rs6601546
Chromosome Location	chr8:10860255-10860256
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10091913	0.96[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10107384	0.96[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10216472	0.83[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10217059	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11250103	0.87[CEU][hapmap]
rs11250108	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11779199	0.96[CEU][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11784312	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs11988372	0.95[CEU][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11995682	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12216757	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12216784	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs12216875	0.96[CEU][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4074822	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4320511	0.95[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4507728	0.95[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4840530	0.87[CEU][hapmap]
rs4841469	0.81[EUR][1000 genomes]
rs4841471	0.95[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4841472	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4841474	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841475	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4841476	0.93[EUR][1000 genomes]
rs4841477	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4841478	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4841479	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56052312	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61427182	0.94[EUR][1000 genomes]
rs6990395	0.92[EUR][1000 genomes]
rs6995129	0.90[ASN][1000 genomes]
rs7001599	0.88[EUR][1000 genomes]
rs7016361	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs73196884	0.94[EUR][1000 genomes]
rs73196885	0.94[EUR][1000 genomes]
rs73196888	0.89[EUR][1000 genomes]
rs7821225	0.90[ASN][1000 genomes]
rs7824797	0.96[CEU][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7825690	0.94[ASN][1000 genomes]
rs7826561	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7833832	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7836687	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7836720	0.95[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7837828	0.95[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7838833	0.95[CEU][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9329232	0.95[CEU][hapmap];0.82[JPT][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9657542	0.87[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv3339026	chr8:10858742-10862940	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10856200-10864800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr8:10859200-10860400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:10859200-10860400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:10859400-10865200	Weak transcription	Brain Hippocampus Middle	brain
5	chr8:10859400-10872200	Weak transcription	Brain Angular Gyrus	brain
6	chr8:10859600-10860400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:10859600-10860600	Enhancers	Brain Germinal Matrix	brain
8	chr8:10859800-10864800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:10860000-10864800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr8:10860000-10864800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr8:10860000-10865000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:10860000-10865000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:10860000-10865000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr8:10860200-10864800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr8:10860200-10865000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links