Variant report

Variant	rs660297
Chromosome Location	chr11:93506550-93506551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93500100..93501816-chr11:93503980..93506998,3	K562	blood:
2	chr11:93473228..93477931-chr11:93504576..93509493,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182919	Chromatin interaction
ENSG00000166012	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12281968	0.80[AFR][1000 genomes]
rs2434983	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs584474	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs592526	1.00[AMR][1000 genomes]
rs604414	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs607826	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs614003	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs622231	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs624883	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs653934	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs655208	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs657177	1.00[AMR][1000 genomes]
rs666470	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs683660	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv832232	chr11:93401314-93549438	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93478800-93508200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:93492200-93506600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:93492200-93507400	Weak transcription	Aorta	Aorta
4	chr11:93492200-93516600	Weak transcription	Psoas Muscle	Psoas
5	chr11:93492200-93516800	Weak transcription	Right Ventricle	heart
6	chr11:93493800-93507200	Weak transcription	Ovary	ovary
7	chr11:93496000-93513600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:93498000-93516600	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:93498600-93516600	Weak transcription	Hela-S3	cervix
10	chr11:93499200-93516600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:93499800-93516600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr11:93505000-93507400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:93505200-93506800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:93505200-93507000	ZNF genes & repeats	Fetal Intestine Small	intestine
15	chr11:93505400-93506600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:93505400-93506800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:93505400-93506800	ZNF genes & repeats	Brain Germinal Matrix	brain
18	chr11:93505600-93506800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
19	chr11:93505800-93516600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:93506000-93506600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
21	chr11:93506200-93506600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:93506200-93506600	ZNF genes & repeats	Spleen	Spleen
23	chr11:93506200-93516600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:93506400-93506800	Flanking Active TSS	HepG2	liver
25	chr11:93506400-93516600	Weak transcription	Stomach Smooth Muscle	stomach

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