Variant report

Variant	rs6603967
Chromosome Location	chr1:92854663-92854664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10747411	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782838	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10874656	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11164605	0.81[EUR][1000 genomes]
rs11166568	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11166575	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1226177	1.00[ASN][1000 genomes]
rs1234874	1.00[ASN][1000 genomes]
rs1386585	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1487537	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1487539	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17519833	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17579779	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1825813	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1906279	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025607	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2031494	0.81[EUR][1000 genomes]
rs2046621	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391139	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391140	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3103177	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3103180	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3122320	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3131815	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3131816	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3131824	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3131831	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4247165	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475034	1.00[ASN][1000 genomes]
rs476490	1.00[ASN][1000 genomes]
rs481384	1.00[ASN][1000 genomes]
rs487443	1.00[ASN][1000 genomes]
rs4970696	0.82[AMR][1000 genomes]
rs4970698	0.82[AMR][1000 genomes]
rs4970708	0.82[AMR][1000 genomes]
rs510857	1.00[ASN][1000 genomes]
rs524989	1.00[ASN][1000 genomes]
rs532031	1.00[ASN][1000 genomes]
rs533124	1.00[ASN][1000 genomes]
rs538054	1.00[ASN][1000 genomes]
rs544556	1.00[ASN][1000 genomes]
rs548100	1.00[ASN][1000 genomes]
rs548141	1.00[ASN][1000 genomes]
rs562119	1.00[ASN][1000 genomes]
rs564077	1.00[ASN][1000 genomes]
rs566576	1.00[ASN][1000 genomes]
rs579668	1.00[ASN][1000 genomes]
rs59679370	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6603963	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6603984	0.80[AMR][1000 genomes]
rs6603985	0.82[AMR][1000 genomes]
rs6604089	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6604091	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6668685	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6676141	0.82[EUR][1000 genomes]
rs6692060	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72960869	0.80[EUR][1000 genomes]
rs7512301	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7518357	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7536295	0.81[EUR][1000 genomes]
rs7542747	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7545445	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7547429	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7552212	0.83[EUR][1000 genomes]
rs912795	0.82[AMR][1000 genomes]

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92833400-92855000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:92833400-92856000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr1:92834400-92855200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr1:92835400-92855200	Weak transcription	Hela-S3	cervix
5	chr1:92844200-92855600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr1:92849600-92854800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:92849600-92854800	ZNF genes & repeats	Aorta	Aorta
8	chr1:92849600-92855200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:92849800-92855200	ZNF genes & repeats	Fetal Intestine Small	intestine
10	chr1:92850000-92855200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
11	chr1:92850200-92855000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:92850200-92855000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
13	chr1:92850200-92855200	ZNF genes & repeats	Liver	Liver
14	chr1:92850200-92855200	ZNF genes & repeats	Fetal Brain Female	brain
15	chr1:92850200-92855400	ZNF genes & repeats	Fetal Lung	lung
16	chr1:92850800-92855000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:92851200-92854800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:92851200-92855200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:92851200-92855400	Strong transcription	Skeletal Muscle Female	skeletal muscle
20	chr1:92851400-92854800	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr1:92851400-92854800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr1:92851400-92854800	ZNF genes & repeats	Ovary	ovary
23	chr1:92851400-92854800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
24	chr1:92851400-92855000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
25	chr1:92851400-92855000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
26	chr1:92851400-92855000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr1:92851400-92855000	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr1:92851400-92855000	ZNF genes & repeats	Brain Germinal Matrix	brain
29	chr1:92851400-92855000	Strong transcription	Brain Substantia Nigra	brain
30	chr1:92851400-92855000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr1:92851400-92855000	Strong transcription	Skeletal Muscle Male	skeletal muscle
32	chr1:92851400-92855200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
33	chr1:92851400-92855400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:92851400-92855400	ZNF genes & repeats	Fetal Muscle Leg	muscle
35	chr1:92851600-92855000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
36	chr1:92851600-92855000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr1:92851800-92855200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr1:92852000-92855200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
39	chr1:92852000-92855200	ZNF genes & repeats	Primary B cells from cord blood	blood
40	chr1:92852200-92854800	Strong transcription	Left Ventricle	heart
41	chr1:92852600-92855000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
42	chr1:92852600-92855200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
43	chr1:92853000-92854800	ZNF genes & repeats	Fetal Intestine Large	intestine
44	chr1:92853000-92855000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr1:92853000-92855000	Strong transcription	Primary B cells from peripheral blood	blood
46	chr1:92853000-92855000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
47	chr1:92853000-92855600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr1:92853200-92854800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr1:92853200-92854800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr1:92853200-92854800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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