Variant report

Variant	rs662360
Chromosome Location	chr6:101829555-101829556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1948050	0.84[EUR][1000 genomes]
rs2518173	0.84[EUR][1000 genomes]
rs2518319	0.84[EUR][1000 genomes]
rs2579929	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2629982	0.84[EUR][1000 genomes]
rs2787573	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2852497	0.95[EUR][1000 genomes]
rs2852500	0.89[EUR][1000 genomes]
rs2852502	0.87[EUR][1000 genomes]
rs2852503	0.87[EUR][1000 genomes]
rs2852504	0.89[EUR][1000 genomes]
rs2852505	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2852506	0.89[EUR][1000 genomes]
rs2852507	0.89[EUR][1000 genomes]
rs2852509	0.89[EUR][1000 genomes]
rs2852510	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2852511	0.89[EUR][1000 genomes]
rs2852512	0.89[EUR][1000 genomes]
rs2852513	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2852514	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs496596	0.86[EUR][1000 genomes]
rs503387	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs566507	0.83[EUR][1000 genomes]
rs570556	0.88[EUR][1000 genomes]
rs579069	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs632956	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs661064	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs675259	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs687497	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101827400-101830200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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