The 2.0 version of rSNPBase

Variant report

Variant rs662546
Chromosome Location chr1:93698479-93698480
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:93647000-93756400 Weak transcription Gastric stomach
2 chr1:93647200-93707400 Weak transcription Duodenum Smooth Muscle Duodenum
3 chr1:93647200-93757600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
4 chr1:93647600-93706600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr1:93654200-93708400 Weak transcription Esophagus oesophagus
6 chr1:93654600-93708000 Weak transcription Ovary ovary
7 chr1:93657600-93708400 Weak transcription Left Ventricle heart
8 chr1:93660600-93705200 Weak transcription Lung lung
9 chr1:93661400-93708200 Weak transcription Fetal Muscle Trunk muscle
10 chr1:93661800-93702800 Weak transcription Fetal Heart heart
11 chr1:93661800-93708200 Weak transcription Fetal Brain Female brain
12 chr1:93663600-93705600 Weak transcription Skeletal Muscle Female skeletal muscle
13 chr1:93665400-93708400 Weak transcription Breast Myoepithelial Primary Cells Breast
14 chr1:93665400-93708400 Weak transcription Spleen Spleen
15 chr1:93665600-93702600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
16 chr1:93665600-93707800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
17 chr1:93665800-93706600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
18 chr1:93665800-93707800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr1:93666600-93727000 Weak transcription Rectal Mucosa Donor 31 rectum
20 chr1:93668800-93708400 Weak transcription Duodenum Mucosa Duodenum
21 chr1:93672600-93708400 Weak transcription Placenta Placenta
22 chr1:93673800-93707400 Weak transcription A549 lung
23 chr1:93682000-93704000 Weak transcription Psoas Muscle Psoas
24 chr1:93682400-93708800 Weak transcription Skeletal Muscle Male skeletal muscle
25 chr1:93684000-93703200 Weak transcription Hela-S3 cervix
26 chr1:93684600-93702600 Weak transcription Fetal Adrenal Gland Adrenal Gland
27 chr1:93684800-93708400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr1:93685200-93702800 Weak transcription iPS-15b Cell Line embryonic stem cell
29 chr1:93685200-93705400 Weak transcription H9 Cell Line embryonic stem cell
30 chr1:93685200-93707400 Weak transcription Cortex derived primary cultured neurospheres brain
31 chr1:93685400-93700200 Weak transcription Primary T cells fromperipheralblood blood
32 chr1:93685400-93708400 Weak transcription Primary T killer naive cells fromperipheralblood blood
33 chr1:93685600-93708400 Weak transcription NH-A brain
34 chr1:93685600-93709200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
35 chr1:93686600-93702600 Weak transcription Adipose Nuclei Adipose
36 chr1:93686600-93705000 Weak transcription Muscle Satellite Cultured Cells --
37 chr1:93686600-93706600 Weak transcription Fetal Muscle Leg muscle
38 chr1:93686600-93708400 Weak transcription Aorta Aorta
39 chr1:93686800-93708400 Weak transcription Fetal Lung lung
40 chr1:93687000-93705600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr1:93688000-93705600 Weak transcription Primary T regulatory cells fromperipheralblood blood
42 chr1:93688200-93714800 Weak transcription HSMMtube muscle
43 chr1:93689000-93698800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
44 chr1:93689200-93708400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr1:93690000-93705200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr1:93690200-93705400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
47 chr1:93690200-93707400 Weak transcription Primary T helper cells PMA-I stimulated --
48 chr1:93690200-93708600 Weak transcription NHLF lung
49 chr1:93690400-93729400 Weak transcription ES-WA7 Cell Line embryonic stem cell
50 chr1:93691000-93701000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015