Variant report

Variant	rs663056
Chromosome Location	chr7:124734014-124734015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1020629	0.94[CHB][hapmap]
rs10256073	0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap]
rs10266152	0.94[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.83[LWK][hapmap];0.84[YRI][hapmap];0.81[ASN][1000 genomes]
rs10269342	0.89[YRI][hapmap]
rs1031952	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[ASN][1000 genomes]
rs10500102	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10954061	0.94[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap]
rs11761435	0.94[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs11767519	0.93[GIH][hapmap];0.81[JPT][hapmap]
rs11771004	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs11771079	0.94[CHB][hapmap]
rs1248737	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12531213	0.90[ASN][1000 genomes]
rs12539481	0.80[CHB][hapmap]
rs12706627	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs13234634	0.88[YRI][hapmap]
rs1383749	0.92[YRI][hapmap]
rs1404897	0.94[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs1471570	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs1481334	0.81[ASN][1000 genomes]
rs1525620	0.84[CHB][hapmap]
rs1552116	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap]
rs1552117	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap]
rs1568882	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17147723	0.94[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap]
rs17147889	0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2291207	0.80[CHB][hapmap];0.93[GIH][hapmap]
rs2929321	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2929322	0.94[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2968868	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34246481	0.94[CHB][hapmap]
rs585988	0.94[EUR][1000 genomes]
rs590516	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs598102	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs612391	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs625037	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs627823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs650653	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs651988	0.94[ASW][hapmap];0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs659269	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs664062	0.82[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs669273	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs670910	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs671359	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6965957	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7791488	0.84[YRI][hapmap]
rs7797011	0.94[CHB][hapmap]
rs792749	0.81[EUR][1000 genomes]
rs967297	0.94[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.83[LWK][hapmap];0.84[YRI][hapmap];0.81[ASN][1000 genomes]
rs9785002	0.94[CHB][hapmap]
rs9942625	0.93[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv889139	chr7:124600505-124767295	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv3394090	chr7:124602150-124900799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv464708	chr7:124703756-124805279	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv608344	chr7:124703756-124805279	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv831119	chr7:124714009-124890119	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124732200-124734600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:124734000-124734600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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